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Merge pull request #102 from Jessime/exit_on_bad_mkdir
Fail if we cannot make output dirs
2 parents 46f81fa + 78f8996 commit 92ab8d7

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tiddit/__main__.py

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Original file line numberDiff line numberDiff line change
@@ -115,11 +115,8 @@ def main():
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i+=1
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prefix=args.o
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try:
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os.mkdir( "{}_tiddit".format(prefix) )
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os.mkdir("{}_tiddit/clips".format(prefix) )
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except:
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print("Folder already exists")
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os.mkdir(f"{prefix}_tiddit")
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os.mkdir(f"{prefix}_tiddit/clips")
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pysam.index("-c","-m","6","-@",str(args.threads),bam_file_name,"{}_tiddit/{}.csi".format(args.o,sample_id))
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