test lib

Author: Zilong-Li

cleanup.win

@@ -1,5 +1,5 @@
 #!/bin/sh
 
 HTSLIB_DIR="src/htslib-1.21"
-rm -f ${HTSLIB_DIR}/config.h src/*.o src/*.so src/*.dll src/*.dylib 
+rm -f ${HTSLIB_DIR}/config.h src/*.o src/*.dll src/*.so src/*.dylib 
 cd $HTSLIB_DIR && make clean && cd -

src/Makevars.win

@@ -11,13 +11,4 @@ else
   PKG_CPPFLAGS += $(shell pkg-config --cflags libcurl)
 endif
 
-.PHONY: all clean 
 
-all : $(SHLIB)
-
-clean:
-	$(RM) *.o
-	$(RM) *.dll
-	$(RM) *.so
-	$(RM) *.dylib
-	(cd "${HTSLIB_DIR}" && $(MAKE) clean && cd -)

src/install.libs.R

@@ -1,6 +1,6 @@
 files <- Sys.glob(paste0("*", SHLIB_EXT))
 files <- c(files, dir("htslib-1.21/", pattern="a$", full.names=TRUE))
-dest <- file.path(R_PACKAGE_DIR, paste0('lib', R_ARCH)) ## lib not libs
+dest <- file.path(R_PACKAGE_DIR, paste0('libs', R_ARCH))
 dir.create(dest, recursive = TRUE, showWarnings = FALSE)
 file.copy(files, dest, overwrite = TRUE)