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Annotator finds a mismatch in taxid when there is none #405

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BlazZupan opened this issue Feb 12, 2025 · 1 comment · Fixed by #411
Closed

Annotator finds a mismatch in taxid when there is none #405

BlazZupan opened this issue Feb 12, 2025 · 1 comment · Fixed by #411
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@BlazZupan
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Describe the bug
Annotator no longer works, and complains with "Data and Genes appear to describe different organisms (mismatching taxonomy_id)", even though the taxid match. See the screenshot.

Image

To Reproduce

Open the workflow: annotator-fails.ows.zip. I have used Bone marrow mononuclear cells (sample) and feed in all marker genes to the annotator.

Expected behavior
Upon receiving this data annotator should show visual annotations of the cell types.

@BlazZupan BlazZupan added the bug label Feb 12, 2025
@janezd
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janezd commented Feb 14, 2025

I know nothing about single-cell stuff, but a note for anybody who explores this bug: we have changed the datasets server, and the INFO file that is downloaded by the Single Cell Datasets widget is generated by a different script. There may be something wrong with the file.

The above screenshot shows taxonomy_id as being the same. What crossed my mind was that perhaps one of the could be a string and another an int. This is a kind of things that I could have accidentally changed in INFO. @BlazZupan, can you check?

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