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| 1 | +--- |
| 2 | +title: 'The BioImage Model Zoo meets the Galaxy platform' |
| 3 | +date: "2025-04-23" |
| 4 | +tease: "New tool to run AI models for image analysis" |
| 5 | +tags: |
| 6 | +- nfdi4bioimage |
| 7 | +- imaging |
| 8 | +subsites: [all-eu,all,global] |
| 9 | +main_subsite: eu |
| 10 | +--- |
| 11 | + |
| 12 | +A new Galaxy integration enables researchers to access AI models from the [BioImage Model Zoo (BioImage.IO)](https://bioimage.io/#/). |
| 13 | +This integration bridges open-source AI models and an accessible, workflow-based computational environment, allowing scientists across disciplines to include deep learning |
| 14 | +models in their workflows. |
| 15 | +This integration is a leap forward for the AI4Life project, which aims to democratize AI in life sciences. “We’re broadening our focus to engage a wider community of |
| 16 | +users by expanding the reach of the BioImage.IO Model Zoo,” explains Diana Chiang Jurado, who, together with Leonid Kostrykin, developed a dedicated tutorial to support users. |
| 17 | +“Using the Galaxy infrastructure, we’re not only lowering technical barriers but also making sure that researchers with no access to local computational resources can still run their analyses.” |
| 18 | + |
| 19 | +Galaxy's established ecosystem brings some benefits: cloud-based computing, reproducibility through workflow provenance, and a collaborative environment thousands of scientists use worldwide. |
| 20 | + |
| 21 | +Integrating these models wasn’t without its challenges. “The BioImage Model Zoo hosts models built on different architectures and frameworks,” notes Anup Kumar, |
| 22 | +the leading developer behind the integration. “One of the most exciting outcomes,” Anup adds, “is the accessibility it provides. Scientists who don’t have a background |
| 23 | +in AI, or who work at underfunded institutions, can now use powerful models with just a few clicks. That’s the kind of impact we’re aiming for.” |
| 24 | + |
| 25 | +With AI-driven image analysis becoming increasingly relevant across scientific fields, from biology to earth sciences or astronomy, the integration sets the stage |
| 26 | +for new cross-disciplinary collaborations like those outlined in the [OSCARS-FIESTA project](https://www.oscars-project.eu/projects/fair-image-analysis-across-sciences). |
| 27 | +“Workflows created in Galaxy are easy to share and adapt,” says Leonid. “That means a model trained on biological data could inspire solutions in climate science or vice versa. It’s about breaking down silos.” |
| 28 | + |
| 29 | +By combining rich model repositories with user-friendly, FAIR workflows, this integration makes advanced image analysis more approachable, adaptable, and impactful for scientists everywhere. |
| 30 | + |
| 31 | +Try the tutorial developed by Diana and Leonid here: [Using BioImage.IO models for image analysis in Galaxy](https://training.galaxyproject.org/training-material/topics/imaging/tutorials/process-image-bioimageio/tutorial.html). |
| 32 | + |
| 33 | +<div class="img-sizer" style="width: 128px"> |
| 34 | +] |
| 35 | +</div> |
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