Fix project_init for missing files.

Author: jmchilton

docs/_writing_publish_intro.rst

@@ -73,7 +73,7 @@ Updating a Repository
 
 ::
 
-    planemo shed_update --check_diff --shed_target local
+    planemo shed_update --shed_target local
 
 Once tools and reqiured dependency files have been published to the tool shed,
 the actual shed dependencies can be automatically and installed and tool 

planemo/commands/cmd_project_init.py

@@ -42,6 +42,7 @@ def cli(ctx, path, template=None, **kwds):
         untar_args = UNTAR_ARGS % (tempdir)
         untar_to(DOWNLOAD_URL, tempdir, untar_args)
         shell("ls '%s'" % (tempdir))
-        shell("mv '%s/%s'/* '%s/%s'/.* '%s'" % (tempdir, template, path))
+        shell("mv '%s/%s'/* '%s'" % (tempdir, template, path))
+        shell("mv '%s/%s'/.* '%s'" % (tempdir, template, path))
     finally:
         shutil.rmtree(tempdir)