Update some dependencies for OpenTSDB#2262.

WARNING: The minimum JDK is now version 8 due to Jackson.
Fix the Json serializer to explicitly write nulls due to API
changes in Jackson.

Author: manolama

src/tools/CliOptions.java

@@ -168,7 +168,7 @@ private static void honorVerboseFlag(final ArgP argp) {
       // level of the underlying logging library.  So we have to violate the
       // encapsulation provided by SLF4J.
       for (final Logger logger :
-           ((Logger) LoggerFactory.getLogger(Logger.ROOT_LOGGER_NAME))
+           ((Logger) LoggerFactory.getLogger("ROOT"))
              .getLoggerContext().getLoggerList()) {
         logger.setLevel(Level.WARN);
       }

src/tsd/HttpJsonSerializer.java

@@ -859,7 +859,7 @@ public Object call(final ArrayList<Object> deferreds) throws Exception {
                 final double value = dp.doubleValue();
                 if (Double.isNaN(value) && 
                     orig_query.fillPolicy() == FillPolicy.NULL) {
-                  json.writeNumberField(Long.toString(timestamp), null);
+                  json.writeNullField(Long.toString(timestamp));
                 } else {
                   json.writeNumberField(Long.toString(timestamp), dp.doubleValue());
                 }

test/core/LongHistogramDataPointForTest.java

@@ -18,7 +18,9 @@
 import java.util.Map;
 
 import org.hbase.async.Bytes;
+import org.junit.Ignore;
 
+@Ignore
 public class LongHistogramDataPointForTest implements Histogram {
   private final int id;
   private long data;

test/core/LongHistogramDataPointForTestDecoder.java

@@ -12,6 +12,9 @@
 // see <http://www.gnu.org/licenses/>.
 package net.opentsdb.core;
 
+import org.junit.Ignore;
+
+@Ignore
 public class LongHistogramDataPointForTestDecoder extends HistogramDataPointCodec {
 
   @Override

third_party/apache/commons-math3-3.6.1.jar.md5

@@ -0,0 +1 @@
+5b730d97e4e6368069de1983937c508e

third_party/apache/include.mk

@@ -1,4 +1,4 @@
-# Copyright (C) 2011-2013  The OpenTSDB Authors.
+# Copyright (C) 2011-2022  The OpenTSDB Authors.
 #
 # Redistribution and use in source and binary forms, with or without
 # modification, are permitted provided that the following conditions are met:
@@ -22,7 +22,7 @@
 # ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
 # POSSIBILITY OF SUCH DAMAGE.
 
-APACHE_MATH_VERSION := 3.4.1
+APACHE_MATH_VERSION := 3.6.1
 APACHE_MATH := third_party/apache/commons-math3-$(APACHE_MATH_VERSION).jar
 APACHE_MATH_BASE_URL := https://repo1.maven.org/maven2/org/apache/commons/commons-math3/$(APACHE_MATH_VERSION)
 

third_party/gwt/gwt-dev-2.5.0.jar.md5

@@ -0,0 +1 @@
+34536303425ef30b16832d384697ddbb

third_party/gwt/gwt-dev-2.6.0.jar.md5

@@ -0,0 +1 @@
+49bfa9ad1bbede5af29f7978a089266d

third_party/gwt/gwt-dev-2.7.0.jar.md5

@@ -1,4 +1,4 @@
-# Copyright (C) 2011-2012  The OpenTSDB Authors.
+# Copyright (C) 2011-2023  The OpenTSDB Authors.
 #
 # This library is free software: you can redistribute it and/or modify it
 # under the terms of the GNU Lesser General Public License as published
@@ -13,7 +13,7 @@
 # You should have received a copy of the GNU Lesser General Public License
 # along with this library.  If not, see <http://www.gnu.org/licenses/>.
 
-GWT_VERSION := 2.6.0
+GWT_VERSION := 2.6.1
 
 GWT_DEV_VERSION := $(GWT_VERSION)
 GWT_DEV := third_party/gwt/gwt-dev-$(GWT_DEV_VERSION).jar

third_party/gwt/gwt-user-2.5.0.jar.md5

@@ -1,4 +1,4 @@
-# Copyright (C) 2011-2014  The OpenTSDB Authors.
+# Copyright (C) 2011-2022  The OpenTSDB Authors.
 #
 # This library is free software: you can redistribute it and/or modify it
 # under the terms of the GNU Lesser General Public License as published
@@ -13,7 +13,7 @@
 # You should have received a copy of the GNU Lesser General Public License
 # along with this library.  If not, see <http://www.gnu.org/licenses/>.
 
-JACKSON_VERSION := 2.9.5
+JACKSON_VERSION := 2.14.1
 
 JACKSON_ANNOTATIONS_VERSION = $(JACKSON_VERSION)
 JACKSON_ANNOTATIONS := third_party/jackson/jackson-annotations-$(JACKSON_ANNOTATIONS_VERSION).jar

third_party/gwt/gwt-user-2.6.0.jar.md5

@@ -0,0 +1 @@
+da4742ba6aeb24bf1bd29382fd95647b

third_party/gwt/gwt-user-2.7.0.jar.md5

@@ -0,0 +1 @@
+f9604a5f31129cdb7db4bdec90111850

third_party/gwt/include.mk

@@ -0,0 +1 @@
+3e3e7aab8799ccc169b10f244e6fb5b4

third_party/jackson/include.mk

@@ -0,0 +1 @@
+040b4b4d8eac886f6b4a2a3bd2f31b00

third_party/jackson/jackson-annotations-2.14.1.jar.md5

@@ -23,7 +23,7 @@ $(JEXL): $(JEXL).md5
 THIRD_PARTY += $(JEXL)
 
 # In here as Jexl depends on it and no one else (for now, I hope)
-COMMONS_LOGGING_VERSION := 1.1.1
+COMMONS_LOGGING_VERSION := 1.2
 COMMONS_LOGGING := third_party/jexl/commons-logging-$(COMMONS_LOGGING_VERSION).jar
 COMMONS_LOGGING_BASE_URL := https://repo1.maven.org/maven2/commons-logging/commons-logging/$(COMMONS_LOGGING_VERSION)
 

third_party/jackson/jackson-annotations-2.4.3.jar.md5

@@ -0,0 +1 @@
+d98a9a02a99a9acd22d7653cbcc1f31f

third_party/jackson/jackson-core-2.14.1.jar.md5

@@ -1,4 +1,4 @@
-# Copyright (C) 2015  The OpenTSDB Authors.
+# Copyright (C) 2015-2022  The OpenTSDB Authors.
 #
 # This library is free software: you can redistribute it and/or modify it
 # under the terms of the GNU Lesser General Public License as published
@@ -12,9 +12,7 @@
 #
 # You should have received a copy of the GNU Lesser General Public License
 # along with this library.  If not, see <http://www.gnu.org/licenses/>.
-
-https://repo1.maven.org/maven2/ch/qos/logback/logback-classic/1.2.9/logback-classic-1.2.9.jar
-LOGBACK_VERSION := 1.2.9
+LOGBACK_VERSION := 1.3.4
 
 LOGBACK_CLASSIC_VERSION := $(LOGBACK_VERSION)
 LOGBACK_CLASSIC := third_party/logback/logback-classic-$(LOGBACK_CLASSIC_VERSION).jar

third_party/jackson/jackson-core-2.4.3.jar.md5

@@ -0,0 +1 @@
+0b98f1f2ad1caa97556b979598038d3d

third_party/jackson/jackson-databind-2.14.1.jar.md5

@@ -0,0 +1 @@
+bbb33326f538cfd28186d5b4310b44fa

third_party/jackson/jackson-databind-2.4.3.jar.md5

@@ -1,4 +1,4 @@
-# Copyright (C) 2015  The OpenTSDB Authors.
+# Copyright (C) 2015-2022  The OpenTSDB Authors.
 #
 # This library is free software: you can redistribute it and/or modify it
 # under the terms of the GNU Lesser General Public License as published

third_party/jexl/commons-logging-1.2.jar.md5

@@ -0,0 +1 @@
+c1967f0a515c4b8155f62478ec823464

third_party/jexl/include.mk

@@ -13,7 +13,7 @@
 # You should have received a copy of the GNU Lesser General Public License
 # along with this library.  If not, see <http://www.gnu.org/licenses/>.
 
-SLF4J_VERSION = 1.7.7
+SLF4J_VERSION = 2.0.6
 
 
 LOG4J_OVER_SLF4J_VERSION := $(SLF4J_VERSION)

third_party/junit/junit-4.10.jar.md5

@@ -0,0 +1 @@
+a5ccd131feef393a926dcdfc80436d08

third_party/junit/junit-4.13.2.jar.md5

@@ -0,0 +1 @@
+0dd65c386e8c5f4e6e014de3f7a7ae60