Merge pull request #3 from mendelics/tests

tests: run tests before release

Author: dschles

.github/workflows/go.yml

@@ -18,6 +18,9 @@ jobs:
         uses: actions/setup-go@v2
         with:
           go-version: 1.16
+      - 
+        name: Test
+        run: go test -v ./...
       -
         name: Run GoReleaser
         uses: goreleaser/goreleaser-action@v2

.gitignore

@@ -1,3 +1,3 @@
 *.json
 *.json.gz
-bin/coverage-*
+dist/

Makefile

@@ -20,7 +20,7 @@ func TestCoveragePerGeneFromBed(t *testing.T) {
 	}
 
 	for i, test := range tt {
-		targets, _, _, _, _, _ := parseMosdepthBed("example_mosdepth_coverage.bed.gz")
+		targets, _, _, _, _, _ := parseMosdepthBed("samples/example_mosdepth_coverage.bed.gz")
 
 		resultMap := getGeneCoverage(targets)
 
@@ -71,7 +71,7 @@ func TestCoveragePerGeneFromVcf(t *testing.T) {
 	}
 
 	for i, test := range tt {
-		targets, _, _ := parseGatkVcf("example_gatk_coverage.vcf.gz")
+		targets, _, _ := parseGatkVcf("samples/example_gatk_coverage.vcf.gz")
 
 		resultMap := getGeneCoverage(targets)
 

bin/_keep.txt

@@ -18,7 +18,7 @@ func TestParseCoverageVcf(t *testing.T) {
 	var expected10x = 32369680
 
 	for i, test := range tt {
-		resultMap, globalTotal, global10x := parseGatkVcf("example_gatk_coverage.vcf.gz")
+		resultMap, globalTotal, global10x := parseGatkVcf("samples/example_gatk_coverage.vcf.gz")
 
 		if globalTotal != expectedGlobal {
 			t.Errorf("expected globalTotal %d, got %d on test number %d", expectedGlobal, globalTotal, i)

coverage_test.go

@@ -21,7 +21,7 @@ func TestParseCoverageBed(t *testing.T) {
 	var expected30x = 34512655
 
 	for i, test := range tt {
-		resultMap, globalTotal, global5x, global10x, global20x, global30x := parseMosdepthBed("example_mosdepth_coverage.bed.gz")
+		resultMap, globalTotal, global5x, global10x, global20x, global30x := parseMosdepthBed("samples/example_mosdepth_coverage.bed.gz")
 
 		if globalTotal != expectedGlobal {
 			t.Errorf("expected globalTotal %d, got %d on test number %d", expectedGlobal, globalTotal, i)