name: nf-core-chipseq-1.2.1 channels: - bioconda - conda-forge - defaults dependencies: - _libgcc_mutex=0.1=conda_forge - _openmp_mutex=4.5=0_gnu - _r-mutex=1.0.1=anacondar_1 - alsa-lib=1.2.3=h516909a_0 - bamtools=2.5.1=he513fc3_6 - bedtools=2.29.2=hc088bd4_0 - binutils_impl_linux-64=2.34=h53a641e_7 - binutils_linux-64=2.34=hc952b39_20 - bioconductor-affy=1.64.0=r36h516909a_0 - bioconductor-affyio=1.56.0=r36h516909a_0 - bioconductor-annotate=1.64.0=r36_0 - bioconductor-annotationdbi=1.48.0=r36_0 - bioconductor-biobase=2.46.0=r36h516909a_0 - bioconductor-biocgenerics=0.32.0=r36_0 - bioconductor-biocparallel=1.20.0=r36he1b5a44_0 - bioconductor-biostrings=2.54.0=r36h516909a_0 - bioconductor-delayedarray=0.12.0=r36h516909a_0 - bioconductor-deseq2=1.26.0=r36he1b5a44_0 - bioconductor-genefilter=1.68.0=r36hc99cbb1_0 - bioconductor-geneplotter=1.64.0=r36_0 - bioconductor-genomeinfodb=1.22.0=r36_0 - bioconductor-genomeinfodbdata=1.2.2=r36_0 - bioconductor-genomicranges=1.38.0=r36h516909a_0 - bioconductor-iranges=2.20.0=r36h516909a_0 - bioconductor-limma=3.42.0=r36h516909a_0 - bioconductor-preprocesscore=1.48.0=r36h516909a_0 - bioconductor-rhtslib=1.18.0=r36hdb70ac9_1 - bioconductor-rsamtools=2.2.0=r36he1b5a44_0 - bioconductor-s4vectors=0.24.0=r36h516909a_0 - bioconductor-summarizedexperiment=1.16.0=r36_0 - bioconductor-vsn=3.54.0=r36h516909a_0 - bioconductor-xvector=0.26.0=r36h516909a_0 - bioconductor-zlibbioc=1.32.0=r36h516909a_0 - boost=1.73.0=py37h429e714_1 - boost-cpp=1.73.0=h6c875cf_0 - brotlipy=0.7.0=py37h8f50634_1000 - bwa=0.7.17=hed695b0_7 - bwidget=1.9.14=0 - bzip2=1.0.8=h516909a_2 - ca-certificates=2020.6.20=hecda079_0 - cairo=1.16.0=hcf35c78_1003 - certifi=2020.6.20=py37hc8dfbb8_0 - cffi=1.14.1=py37h2b28604_0 - chardet=3.0.4=py37hc8dfbb8_1006 - click=7.1.2=pyh9f0ad1d_0 - coloredlogs=14.0=py37hc8dfbb8_1 - colormath=3.0.0=py_2 - cryptography=3.0=py37hb09aad4_0 - curl=7.68.0=hf8cf82a_0 - cutadapt=2.10=py37hf01694f_1 - cycler=0.10.0=py_2 - decorator=4.4.2=py_0 - deeptools=3.4.3=py_0 - deeptoolsintervals=0.1.9=py37hf01694f_2 - dnaio=0.4.2=py37hf01694f_1 - fastqc=0.11.9=0 - font-ttf-dejavu-sans-mono=2.37=hab24e00_0 - fontconfig=2.13.1=h86ecdb6_1001 - freetype=2.10.2=he06d7ca_0 - fribidi=1.0.10=h516909a_0 - future=0.18.2=py37hc8dfbb8_1 - gawk=5.1.0=h516909a_0 - gcc_impl_linux-64=7.5.0=hd420e75_6 - gcc_linux-64=7.5.0=h09487f9_20 - gettext=0.19.8.1=hc5be6a0_1002 - gfortran_impl_linux-64=7.5.0=hdf63c60_6 - gfortran_linux-64=7.5.0=h09487f9_20 - giflib=5.2.1=h516909a_2 - glib=2.65.0=h6f030ca_0 - graphite2=1.3.13=he1b5a44_1001 - gsl=2.5=h294904e_1 - gxx_impl_linux-64=7.5.0=hdf63c60_6 - gxx_linux-64=7.5.0=h09487f9_20 - harfbuzz=2.4.0=h9f30f68_3 - homer=4.11=pl526h9a982cc_2 - htslib=1.10.2=h78d89cc_0 - humanfriendly=8.2=py37hc8dfbb8_0 - icu=64.2=he1b5a44_1 - idna=2.10=pyh9f0ad1d_0 - importlib-metadata=1.7.0=py37hc8dfbb8_0 - jinja2=2.11.2=pyh9f0ad1d_0 - jpeg=9d=h516909a_0 - kiwisolver=1.2.0=py37h99015e2_0 - krb5=1.16.4=h2fd8d38_0 - lcms2=2.11=hbd6801e_0 - ld_impl_linux-64=2.34=h53a641e_7 - libblas=3.8.0=11_openblas - libcblas=3.8.0=11_openblas - libcurl=7.68.0=hda55be3_0 - libdeflate=1.3=h516909a_0 - libedit=3.1.20191231=h46ee950_1 - libffi=3.2.1=he1b5a44_1007 - libgcc-ng=9.3.0=h24d8f2e_11 - libgfortran-ng=7.5.0=hdf63c60_11 - libgomp=9.3.0=h24d8f2e_11 - libiconv=1.15=h516909a_1006 - liblapack=3.8.0=11_openblas - libopenblas=0.3.6=h6e990d7_6 - libpng=1.6.37=hed695b0_1 - libssh2=1.9.0=hab1572f_5 - libstdcxx-ng=9.3.0=hdf63c60_11 - libtiff=4.1.0=hc7e4089_6 - libuuid=2.32.1=h14c3975_1000 - libwebp-base=1.1.0=h516909a_3 - libxcb=1.13=h14c3975_1002 - libxml2=2.9.10=hee79883_0 - lz4-c=1.9.2=he1b5a44_1 - lzstring=1.0.4=py_1001 - macs2=2.2.7.1=py37hf01694f_1 - make=4.3=h516909a_0 - markdown=3.2.2=py_0 - markupsafe=1.1.1=py37h8f50634_1 - matplotlib-base=3.3.0=py37hd478181_1 - multiqc=1.9=py_1 - mysql-connector-c=6.1.11=h876a3cc_1006 - ncurses=6.1=hf484d3e_1002 - networkx=2.4=py_1 - numpy=1.19.1=py37h8960a57_0 - olefile=0.46=py_0 - openblas=0.3.6=h6e990d7_6 - openjdk=11.0.1=hacce0ff_1021 - openssl=1.1.1g=h516909a_1 - pango=1.42.4=h7062337_4 - pcre=8.44=he1b5a44_0 - perl=5.26.2=h516909a_1006 - phantompeakqualtools=1.2.2=0 - picard=2.23.1=h37ae868_0 - pigz=2.3.4=hed695b0_1 - pillow=7.2.0=py37h718be6c_1 - pip=20.2=py_0 - pixman=0.38.0=h516909a_1003 - plotly=4.9.0=pyh9f0ad1d_0 - preseq=2.0.3=hf53bd2b_3 - pthread-stubs=0.4=h14c3975_1001 - py2bit=0.3.0=py37hf01694f_4 - pybigwig=0.3.17=py37hc013797_0 - pycparser=2.20=pyh9f0ad1d_2 - pygments=2.6.1=py_0 - pymdown-extensions=7.1=pyh9f0ad1d_0 - pyopenssl=19.1.0=py_1 - pyparsing=2.4.7=pyh9f0ad1d_0 - pysam=0.15.3=py37hbcae180_3 - pysocks=1.7.1=py37hc8dfbb8_1 - python=3.7.6=cpython_h8356626_6 - python-dateutil=2.8.1=py_0 - python_abi=3.7=1_cp37m - pyyaml=5.3.1=py37h8f50634_0 - r-acepack=1.4.1=r36h9bbef5b_1005 - r-assertthat=0.2.1=r36h6115d3f_2 - r-backports=1.1.8=r36hcdcec82_0 - r-base=3.6.2=h3a67422_0 - r-base64enc=0.1_3=r36hcdcec82_1004 - r-bh=1.72.0_3=r36h6115d3f_1 - r-biocmanager=1.30.10=r36h6115d3f_1 - r-bit=1.1_15.2=r36hcdcec82_1 - r-bit64=0.9_7.1=r36hcdcec82_0 - r-bitops=1.0_6=r36hcdcec82_1004 - r-blob=1.2.1=r36h6115d3f_1 - r-callr=3.4.3=r36h6115d3f_1 - r-catools=1.18.0=r36h0357c0b_1 - r-checkmate=2.0.0=r36hcdcec82_1 - r-cli=2.0.2=r36h6115d3f_1 - r-cluster=2.1.0=r36h9bbef5b_3 - r-colorspace=1.4_1=r36hcdcec82_2 - r-crayon=1.3.4=r36h6115d3f_1003 - r-data.table=1.12.8=r36hcdcec82_1 - r-dbi=1.1.0=r36h6115d3f_1 - r-desc=1.2.0=r36h6115d3f_1003 - r-digest=0.6.25=r36h0357c0b_2 - r-dplyr=1.0.0=r36h0357c0b_0 - r-ellipsis=0.3.1=r36hcdcec82_0 - r-evaluate=0.14=r36h6115d3f_2 - r-fansi=0.4.1=r36hcdcec82_1 - r-farver=2.0.3=r36h0357c0b_1 - r-foreign=0.8_76=r36hcdcec82_1 - r-formatr=1.7=r36h6115d3f_2 - r-formula=1.2_3=r36h6115d3f_1003 - r-futile.logger=1.4.3=r36h6115d3f_1003 - r-futile.options=1.0.1=r36h6115d3f_1002 - r-generics=0.0.2=r36h6115d3f_1003 - r-getopt=1.20.3=r36_2 - r-ggplot2=3.3.2=r36h6115d3f_0 - r-glue=1.4.1=r36hcdcec82_0 - r-gridextra=2.3=r36h6115d3f_1003 - r-gtable=0.3.0=r36h6115d3f_3 - r-highr=0.8=r36h6115d3f_2 - r-hmisc=4.4_0=r36h9bbef5b_1 - r-htmltable=2.0.1=r36h6115d3f_0 - r-htmltools=0.5.0=r36h0357c0b_0 - r-htmlwidgets=1.5.1=r36h6115d3f_1 - r-isoband=0.2.2=r36h0357c0b_0 - r-jpeg=0.1_8.1=r36hcdcec82_1 - r-jsonlite=1.7.0=r36hcdcec82_0 - r-knitr=1.29=r36h6115d3f_0 - r-labeling=0.3=r36h6115d3f_1003 - r-lambda.r=1.2.4=r36h6115d3f_1 - r-lattice=0.20_41=r36hcdcec82_2 - r-latticeextra=0.6_29=r36h6115d3f_1 - r-lifecycle=0.2.0=r36h6115d3f_1 - r-locfit=1.5_9.4=r36hcdcec82_1 - r-magrittr=1.5=r36h6115d3f_1003 - r-markdown=1.1=r36hcdcec82_1 - r-mass=7.3_51.6=r36hcdcec82_2 - r-matrix=1.2_18=r36h7fa42b6_3 - r-matrixstats=0.56.0=r36hcdcec82_1 - r-memoise=1.1.0=r36h6115d3f_1004 - r-mgcv=1.8_31=r36h7fa42b6_1 - r-mime=0.9=r36hcdcec82_1 - r-munsell=0.5.0=r36h6115d3f_1003 - r-nlme=3.1_148=r36h9bbef5b_0 - r-nnet=7.3_14=r36hcdcec82_1 - r-optparse=1.6.6=r36h6115d3f_1 - r-pheatmap=1.0.12=r36h6115d3f_2 - r-pillar=1.4.6=r36h6115d3f_0 - r-pkgbuild=1.1.0=r36h6115d3f_0 - r-pkgconfig=2.0.3=r36h6115d3f_1 - r-pkgload=1.1.0=r36h0357c0b_0 - r-plogr=0.2.0=r36h6115d3f_1003 - r-plyr=1.8.6=r36h0357c0b_1 - r-png=0.1_7=r36hcdcec82_1004 - r-praise=1.0.0=r36h6115d3f_1004 - r-prettyunits=1.1.1=r36h6115d3f_1 - r-processx=3.4.3=r36hcdcec82_0 - r-ps=1.3.3=r36hcdcec82_0 - r-purrr=0.3.4=r36hcdcec82_1 - r-r6=2.4.1=r36h6115d3f_1 - r-rcolorbrewer=1.1_2=r36h6115d3f_1003 - r-rcpp=1.0.5=r36h0357c0b_0 - r-rcpparmadillo=0.9.900.2.0=r36h51c796c_0 - r-rcurl=1.98_1.2=r36hcdcec82_0 - r-reshape2=1.4.4=r36h0357c0b_1 - r-rlang=0.4.7=r36hcdcec82_0 - r-rpart=4.1_15=r36hcdcec82_2 - r-rprojroot=1.3_2=r36h6115d3f_1003 - r-rsqlite=2.2.0=r36h0357c0b_2 - r-rstudioapi=0.11=r36h6115d3f_1 - r-scales=1.1.1=r36h6115d3f_0 - r-snow=0.4_3=r36h6115d3f_1002 - r-snowfall=1.84_6.1=r36h6115d3f_1003 - r-spp=1.16.0=r36h0357c0b_1 - r-stringi=1.4.6=r36h0e574ca_2 - r-stringr=1.4.0=r36h6115d3f_2 - r-survival=3.2_3=r36hcdcec82_0 - r-testthat=2.3.2=r36h0357c0b_1 - r-tibble=3.0.3=r36hcdcec82_0 - r-tidyr=1.1.0=r36h0357c0b_0 - r-tidyselect=1.1.0=r36h6115d3f_0 - r-upsetr=1.4.0=r36h6115d3f_2 - r-utf8=1.1.4=r36hcdcec82_1003 - r-vctrs=0.3.2=r36hcdcec82_0 - r-viridis=0.5.1=r36h6115d3f_1004 - r-viridislite=0.3.0=r36h6115d3f_1003 - r-withr=2.2.0=r36h6115d3f_1 - r-xfun=0.15=r36hcdcec82_1 - r-xml=3.99_0.3=r36hcdcec82_1 - r-xtable=1.8_4=r36h6115d3f_3 - r-yaml=2.2.1=r36hcdcec82_1 - r-zeallot=0.1.0=r36h6115d3f_1002 - readline=8.0=h46ee950_1 - requests=2.24.0=pyh9f0ad1d_0 - retrying=1.3.3=py_2 - samtools=1.10=h9402c20_2 - scipy=1.5.2=py37hb14ef9d_0 - sed=4.8=hbfbb72e_0 - setuptools=49.2.0=py37hc8dfbb8_0 - simplejson=3.17.2=py37h8f50634_0 - six=1.15.0=pyh9f0ad1d_0 - spectra=0.0.11=py_1 - sqlite=3.32.3=hcee41ef_1 - subread=2.0.1=hed695b0_0 - tk=8.6.10=hed695b0_0 - tktable=2.10=h555a92e_3 - tornado=6.0.4=py37h8f50634_1 - trim-galore=0.6.5=0 - ucsc-bedgraphtobigwig=357=h35c10e6_3 - urllib3=1.25.10=py_0 - wheel=0.34.2=py_1 - xopen=0.9.0=py37hc8dfbb8_0 - xorg-fixesproto=5.0=h14c3975_1002 - xorg-inputproto=2.3.2=h14c3975_1002 - xorg-kbproto=1.0.7=h14c3975_1002 - xorg-libice=1.0.10=h516909a_0 - xorg-libsm=1.2.3=h84519dc_1000 - xorg-libx11=1.6.9=h516909a_0 - xorg-libxau=1.0.9=h14c3975_0 - xorg-libxdmcp=1.1.3=h516909a_0 - xorg-libxext=1.3.4=h516909a_0 - xorg-libxfixes=5.0.3=h516909a_1004 - xorg-libxi=1.7.10=h516909a_0 - xorg-libxrender=0.9.10=h516909a_1002 - xorg-libxtst=1.2.3=h516909a_1002 - xorg-recordproto=1.14.2=h516909a_1002 - xorg-renderproto=0.11.1=h14c3975_1002 - xorg-xextproto=7.3.0=h14c3975_1002 - xorg-xproto=7.0.31=h14c3975_1007 - xz=5.2.5=h516909a_1 - yaml=0.2.5=h516909a_0 - zipp=3.1.0=py_0 - zlib=1.2.11=h516909a_1006 - zstd=1.4.5=h6597ccf_2 prefix: /opt/conda/envs/nf-core-chipseq-1.2.1