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Thanks for your continuous update for the EDTA package!
I used it at first time in 2020. It`s such a powerful tool to annotate the genomes.
And here I got two new questions:
Does panEDTA workflow work for different plant species? Just like use it to annotate TE among rice, maize, wheat together.
Does EDTA annotate the TE in other species properly? Such as animal and nematodes.
Also, I encounted a small issue when I install the newest version EDTA.
I can install it smoothly by conda.
But I failed in the test with test file wrapped in the package.
The error message just showed there was no genome.fa.mod.SINE.raw.fa.
I know it could be solved by "--force 1". But I think the genome.fa under the test dir should pass the test.
And I also test it with a the maize chr10 fasta. It still failed with same issue.
So, is this situation normal?
Best,
Jie
The text was updated successfully, but these errors were encountered:
Hi Shujun,
Thanks for your continuous update for the EDTA package!
I used it at first time in 2020. It`s such a powerful tool to annotate the genomes.
And here I got two new questions:
Also, I encounted a small issue when I install the newest version EDTA.
I can install it smoothly by conda.
But I failed in the test with test file wrapped in the package.
The error message just showed there was no genome.fa.mod.SINE.raw.fa.
I know it could be solved by "--force 1". But I think the genome.fa under the test dir should pass the test.
And I also test it with a the maize chr10 fasta. It still failed with same issue.
So, is this situation normal?
Best,
Jie
The text was updated successfully, but these errors were encountered: