[INFRA] make every seqan3 header self-contained; no exceptions anymore

marehr · marehr · commit 1289b8858630 · 2019-06-18T01:57:37.000+02:00
diff --git a/include/seqan3/alphabet/composite/detail.hpp b/include/seqan3/alphabet/composite/detail.hpp
@@ -14,7 +14,9 @@
 
 #include <type_traits>
 
+#include <seqan3/alphabet/concept.hpp>
 #include <seqan3/core/platform.hpp>
+#include <seqan3/core/concept/core_language.hpp>
 
 namespace seqan3::detail
 {
diff --git a/include/seqan3/alphabet/detail/hash.hpp b/include/seqan3/alphabet/detail/hash.hpp
@@ -12,8 +12,9 @@
 
 #pragma once
 
-#include <seqan3/core/type_traits/range.hpp>
-#include <seqan3/std/ranges>
+#include <functional>
+
+#include <seqan3/alphabet/concept.hpp>
 
 namespace std
 {
diff --git a/include/seqan3/argument_parser/detail/version_check.hpp b/include/seqan3/argument_parser/detail/version_check.hpp
@@ -20,7 +20,11 @@
 #include <iostream>
 #include <regex>
 
+#include <seqan3/version.hpp>
+#include <seqan3/core/detail/terminal.hpp>
 #include <seqan3/io/detail/misc.hpp>
+#include <seqan3/io/detail/safe_filesystem_entry.hpp>
+#include <seqan3/std/charconv>
 
 namespace seqan3::detail
 {
diff --git a/include/seqan3/io/detail/misc_output.hpp b/include/seqan3/io/detail/misc_output.hpp
@@ -24,6 +24,7 @@
     #include <seqan3/contrib/stream/bgzf_ostream.hpp>
     #include <seqan3/contrib/stream/gz_ostream.hpp>
 #endif
+#include <seqan3/std/filesystem>
 
 namespace seqan3::detail
 {
diff --git a/include/seqan3/search/algorithm/detail/search_common.hpp b/include/seqan3/search/algorithm/detail/search_common.hpp
@@ -14,6 +14,8 @@
 
 #include <type_traits>
 
+#include <seqan3/core/platform.hpp>
+
 namespace seqan3::detail
 {
 
diff --git a/include/seqan3/search/algorithm/detail/search_scheme_precomputed.hpp b/include/seqan3/search/algorithm/detail/search_scheme_precomputed.hpp
@@ -12,6 +12,11 @@
 
 #pragma once
 
+#include <array>
+#include <vector>
+
+#include <seqan3/core/platform.hpp>
+
 namespace seqan3::detail
 {
 
diff --git a/include/seqan3/search/algorithm/detail/search_trivial.hpp b/include/seqan3/search/algorithm/detail/search_trivial.hpp
@@ -16,6 +16,7 @@
 #include <type_traits>
 
 #include <seqan3/range/concept.hpp>
+#include <seqan3/range/view/drop.hpp>
 #include <seqan3/search/algorithm/detail/search_common.hpp>
 #include <seqan3/std/ranges>
 
diff --git a/include/seqan3/search/fm_index/detail/csa_alphabet_strategy.hpp b/include/seqan3/search/fm_index/detail/csa_alphabet_strategy.hpp
@@ -27,6 +27,8 @@
 #include <sdsl/sdsl_concepts.hpp>
 #include <sdsl/select_support.hpp>
 
+#include <seqan3/core/platform.hpp>
+
 namespace sdsl
 {
 
diff --git a/include/seqan3/search/fm_index/detail/fm_index_cursor.hpp b/include/seqan3/search/fm_index/detail/fm_index_cursor.hpp
@@ -12,6 +12,7 @@
 
 #pragma once
 
+#include <tuple>
 #include <type_traits>
 
 #include <seqan3/core/platform.hpp>
diff --git a/include/seqan3/std/charconv b/include/seqan3/std/charconv
diff --git a/include/seqan3/std/charconv_detail.hpp b/include/seqan3/std/charconv_detail.hpp
diff --git a/test/header/CMakeLists.txt b/test/header/CMakeLists.txt

Original file line number	Diff line number	Diff line change
`@@ -14,7 +14,9 @@`
`14`	`14`
`15`	`15`	`#include <type_traits>`
`16`	`16`
	`17`	`+#include <seqan3/alphabet/concept.hpp>`
`17`	`18`	`#include <seqan3/core/platform.hpp>`
	`19`	`+#include <seqan3/core/concept/core_language.hpp>`
`18`	`20`
`19`	`21`	`namespace seqan3::detail`
`20`	`22`	`{`
Original file line number	Diff line number	Diff line change
`@@ -12,8 +12,9 @@`
`12`	`12`
`13`	`13`	`#pragma once`
`14`	`14`
`15`		`-#include <seqan3/core/type_traits/range.hpp>`
`16`		`-#include <seqan3/std/ranges>`
	`15`	`+#include <functional>`
	`16`	`+`
	`17`	`+#include <seqan3/alphabet/concept.hpp>`
`17`	`18`
`18`	`19`	`namespace std`
`19`	`20`	`{`
Original file line number	Diff line number	Diff line change
`@@ -24,6 +24,7 @@`
`24`	`24`	`#include <seqan3/contrib/stream/bgzf_ostream.hpp>`
`25`	`25`	`#include <seqan3/contrib/stream/gz_ostream.hpp>`
`26`	`26`	`#endif`
	`27`	`+#include <seqan3/std/filesystem>`
`27`	`28`
`28`	`29`	`namespace seqan3::detail`
`29`	`30`	`{`
Original file line number	Diff line number	Diff line change
`@@ -14,6 +14,8 @@`
`14`	`14`
`15`	`15`	`#include <type_traits>`
`16`	`16`
	`17`	`+#include <seqan3/core/platform.hpp>`
	`18`	`+`
`17`	`19`	`namespace seqan3::detail`
`18`	`20`	`{`
`19`	`21`
Original file line number	Diff line number	Diff line change
`@@ -12,6 +12,11 @@`
`12`	`12`
`13`	`13`	`#pragma once`
`14`	`14`
	`15`	`+#include <array>`
	`16`	`+#include <vector>`
	`17`	`+`
	`18`	`+#include <seqan3/core/platform.hpp>`
	`19`	`+`
`15`	`20`	`namespace seqan3::detail`
`16`	`21`	`{`
`17`	`22`
Original file line number	Diff line number	Diff line change
`@@ -27,6 +27,8 @@`
`27`	`27`	`#include <sdsl/sdsl_concepts.hpp>`
`28`	`28`	`#include <sdsl/select_support.hpp>`
`29`	`29`
	`30`	`+#include <seqan3/core/platform.hpp>`
	`31`	`+`
`30`	`32`	`namespace sdsl`
`31`	`33`	`{`
`32`	`34`