Merge pull request #3359 from eseiler/fix/api

[FIX,TEST] API

Author: eseiler

test/api_stability/3.0.2/0001-NOAPI-Disable-Werror.patch.license

@@ -1,7 +1,7 @@
-From 91551c67f266dd87da101b27a46e63a678c01ad8 Mon Sep 17 00:00:00 2001
+From 04d9216d36505d9368ee84f969ccd5ed656820e9 Mon Sep 17 00:00:00 2001
 From: Enrico Seiler <[email protected]>
 Date: Thu, 28 Sep 2023 21:28:37 +0200
-Subject: [PATCH 1/8] [FIX] take_until_view_test
+Subject: [PATCH 1/9] [FIX] take_until_view_test
 
 mutable refers to the capture
 ---
@@ -27,5 +27,5 @@ index 970a3a1b1..8f34f7014 100644
          });
      do_concepts(adapt2, false);
 -- 
-2.47.2
+2.49.0
 

test/api_stability/3.0.2/0002-NOAPI-DETAIL-MISC-Remove-top-level-scoring-scheme-de.patch.license

@@ -1,7 +1,7 @@
-From 760b8f7d5d3222a786dff1d8f0c2d3fe4fcead47 Mon Sep 17 00:00:00 2001
+From a897db06e12dbf172b6158d9e763e59ddf29f373 Mon Sep 17 00:00:00 2001
 From: Enrico Seiler <[email protected]>
 Date: Thu, 28 Sep 2023 19:35:57 +0200
-Subject: [PATCH 2/8] [FIX] Change constexpr test
+Subject: [PATCH 2/9] [FIX] Change constexpr test
 
 gcc11 complains suddenly
 ---
@@ -21,5 +21,5 @@ index 54bcb640c..460fab223 100644
 +    [[maybe_unused]] static constinit auto combined = adaptor1 | adaptor2;
  }
 -- 
-2.47.2
+2.49.0
 

test/api_stability/3.0.2/0003-NOAPI-INCLUDE-add-missing-include-bi_fm_index.patch.license

@@ -1,7 +1,7 @@
-From 19f492b5e22fad6c94ce617af2c979072627e856 Mon Sep 17 00:00:00 2001
+From 4aca2fefe2bd6a7c20bd257d1e016cea4cd435c8 Mon Sep 17 00:00:00 2001
 From: Enrico Seiler <[email protected]>
 Date: Sun, 28 Jul 2024 15:17:28 +0200
-Subject: [PATCH 3/8] [API] hamming scoring scheme
+Subject: [PATCH 3/9] [API] hamming scoring scheme
 
 ---
  .../08_pairwise_alignment/pa_assignment_3_solution.cpp    | 6 ++++--
@@ -77,5 +77,5 @@ index 7ec211537..ee2e501a8 100644
              if (i == j)
                  EXPECT_EQ((scheme.score(seqan3::assign_rank_to(i, seqan3::dna15{}),
 -- 
-2.47.2
+2.49.0
 

test/api_stability/3.0.2/0004-NOAPI-INCLUDE-add-missing-include-gap-gapped.patch.license

@@ -1,7 +1,7 @@
-From 0e7614bad80a7271b0161e52b2239b27ac390555 Mon Sep 17 00:00:00 2001
+From 644d03ff0e7b85ac1fd71f47dd479dd1562f4788 Mon Sep 17 00:00:00 2001
 From: Enrico Seiler <[email protected]>
 Date: Mon, 19 Aug 2024 14:13:08 +0200
-Subject: [PATCH 4/8] [API] seqan3::sam_file_program_info_t::user_tags
+Subject: [PATCH 4/9] [API] seqan3::sam_file_program_info_t::user_tags
 
 ---
  test/unit/io/sam_file/format_sam_test.cpp           | 13 ++-----------
@@ -51,5 +51,5 @@ index 8cd712ddb..599a04bbc 100644
      header.comments.push_back("This is a comment.");
 
 -- 
-2.47.2
+2.49.0
 

test/api_stability/3.0.2/0005-NOAPI-DETAIL-MISC-rename-detail-char_predicate_-comb.patch.license

@@ -1,7 +1,7 @@
-From ddaa2f283f1e7c6ec3ec8ef5b36b78a89ed94a2b Mon Sep 17 00:00:00 2001
+From 8ebc91358cec390e00b9e6acfa277ce5a19747f1 Mon Sep 17 00:00:00 2001
 From: Enrico Seiler <[email protected]>
 Date: Wed, 22 Jan 2025 14:55:53 +0100
-Subject: [PATCH 5/8] [NOAPI][DETAIL] Update copyright
+Subject: [PATCH 5/9] [NOAPI][DETAIL] Update copyright
 
 ---
  test/unit/argument_parser/detail/format_help_test.cpp | 10 +++++-----
@@ -121,5 +121,5 @@ index 5cdd9cdea..ee0c810a5 100644
      testing::internal::CaptureStdout();
      EXPECT_EXIT(parser.parse(), ::testing::ExitedWithCode(EXIT_SUCCESS), "");
 -- 
-2.47.2
+2.49.0
 

test/api_stability/3.0.2/0006-NOAPI-DETAIL-FIX-renaming-config_element_specialisat.patch.license

@@ -1,7 +1,7 @@
-From e963f7c17989824777d2ee7a7a71bc7bf7d88365 Mon Sep 17 00:00:00 2001
+From 73550abadb9469d88ef49d6dd9ad9ead974f8a09 Mon Sep 17 00:00:00 2001
 From: Enrico Seiler <[email protected]>
 Date: Wed, 22 Jan 2025 17:11:10 +0100
-Subject: [PATCH 6/8] [NOAPI][DETAIL] Use std::ranges::all
+Subject: [PATCH 6/9] [NOAPI][DETAIL] Use std::ranges::all
 
 ---
  test/performance/search/search_benchmark.cpp        |  5 ++---
@@ -241,5 +241,5 @@ index 1567d93ed..a800b317c 100644
      using sentinel_type = std::ranges::sentinel_t<view_type>;
 
 -- 
-2.47.2
+2.49.0