SIIM Meeting 2021 Hands-on Session

Basics of Image Processing

by João Santinha, Felipe Kitamura, and Nuno Loução

Instructions

Run using mybinder

Run Jupyter Notebooks locally - Installation and Jupyter notebook launch

1. To set the virtual environment to run this tutorial we will use conda. If you do not have you can install one of these two options:

• Anaconda (management system with some packages already built in)
• Miniconda (management system without packages)

2. Clone this repository or download the .zip file to your documents folder (to clone the repository you need to have git install):

• clone repository in Windows using the following commands on your command line (replace <current_user> by your user name):

  cd C:\Users\<current_user>\Documents\
  git clone https://github.com/JoaoSantinha/SIIM21_BIP.git

• clone repository in Mac/Linux using the following commands on your terminal:

  cd ~/Documents
  git clone https://github.com/JoaoSantinha/SIIM21_BIP.git

3. Then create environment (called SIIM_BIP) and install required packages automatically:

  cd SIIM21_BIP
  conda env create -f environment.yml

4. Activate environment and start jupyter notebook:

  conda activate SIIM_BIP
  jupyter notebook