moved PerAlleleAnnotations to the INFO field #5518
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takutosato
approved these changes
Dec 13, 2018
| @@ -1,12 +1,14 @@ | |||
| package org.broadinstitute.hellbender.tools.walkers.annotator; | |||
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| import com.google.common.collect.ImmutableMap; | |||
| import htsjdk.variant.variantcontext.Allele; | |||
| import htsjdk.variant.variantcontext.Genotype; | |||
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@takutosato The extra strength of normal reads informing the ref allele's annotations improves results (very) slightly in all of our validations. The deeper reason for this change is in anticipation of multi-sample mode, where filtering based on a single INFO field will be simpler and probably statistically more powerful than filtering on a bunch of separate genotype fields.