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Fixed edge case of zero-depth in FilterMutectCalls germline filter #5578

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Merged
merged 1 commit into from
Jan 16, 2019

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davidbenjamin
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@takutosato Here's another bug fix. After the big filtering refactor M2 filters will be unit-testable and these things will be easier to prevent.

This fixes the last edge case mentioned by @byoo in the discussion of #5563.

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codecov-io commented Jan 15, 2019

Codecov Report

Merging #5578 into master will decrease coverage by 0.001%.
The diff coverage is 0%.

@@               Coverage Diff               @@
##              master     #5578       +/-   ##
===============================================
- Coverage     87.054%   87.054%   -0.001%     
  Complexity     31453     31453               
===============================================
  Files           1921      1921               
  Lines         144996    144998        +2     
  Branches       16064     16064               
===============================================
+ Hits          126225    126226        +1     
- Misses         12929     12930        +1     
  Partials        5842      5842
Impacted Files Coverage Δ Complexity Δ
...r/tools/walkers/mutect/Mutect2FilteringEngine.java 85.324% <0%> (-0.586%) 89 <1> (ø)
...nder/utils/runtime/StreamingProcessController.java 67.773% <0%> (+0.474%) 33% <0%> (ø) ⬇️

@davidbenjamin davidbenjamin merged commit 19f8268 into master Jan 16, 2019
@davidbenjamin davidbenjamin deleted the db_edge_case branch January 16, 2019 00:10
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3 participants