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removing broken cran mirror #5593

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Merged
merged 4 commits into from
Jan 23, 2019
Merged

removing broken cran mirror #5593

merged 4 commits into from
Jan 23, 2019

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lbergelson
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codecov-io commented Jan 22, 2019

Codecov Report

Merging #5593 into master will increase coverage by 0.211%.
The diff coverage is n/a.

@@               Coverage Diff               @@
##              master     #5593       +/-   ##
===============================================
+ Coverage     86.838%   87.049%   +0.211%     
- Complexity     31439     31526       +87     
===============================================
  Files           1928      1928               
  Lines         145340    145340               
  Branches       16089     16089               
===============================================
+ Hits          126211    126517      +306     
+ Misses         13301     12963      -338     
- Partials        5828      5860       +32
Impacted Files Coverage Δ Complexity Δ
...nder/utils/runtime/StreamingProcessController.java 67.773% <0%> (-0.948%) 33% <0%> (-1%)
...ithwaterman/SmithWatermanIntelAlignerUnitTest.java 60% <0%> (ø) 2% <0%> (ø) ⬇️
.../hellbender/tools/genomicsdb/GenomicsDBImport.java 78.195% <0%> (+0.376%) 53% <0%> (ø) ⬇️
...stitute/hellbender/engine/spark/GATKSparkTool.java 81.921% <0%> (+1.13%) 78% <0%> (ø) ⬇️
...hellbender/utils/pairhmm/VectorLoglessPairHMM.java 86.842% <0%> (+1.316%) 12% <0%> (ø) ⬇️
...institute/hellbender/exceptions/UserException.java 66.197% <0%> (+1.408%) 3% <0%> (ø) ⬇️
...institute/hellbender/engine/FeatureDataSource.java 76.471% <0%> (+1.471%) 42% <0%> (+2%) ⬆️
...te/hellbender/engine/spark/VariantWalkerSpark.java 75% <0%> (+2.273%) 14% <0%> (ø) ⬇️
...stitute/hellbender/utils/runtime/RuntimeUtils.java 70.588% <0%> (+2.941%) 10% <0%> (ø) ⬇️
...adinstitute/hellbender/engine/ReadsDataSource.java 92.424% <0%> (+3.03%) 63% <0%> (+2%) ⬆️
... and 10 more

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Tests pass now -- switch to a non-snapshot base image, then this can be merged

@lbergelson lbergelson merged commit c120323 into master Jan 23, 2019
@lbergelson lbergelson deleted the lb_remove_broken_cran_mirror branch January 23, 2019 18:10
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3 participants