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Updates for latest data source release. #5614

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Merged
merged 1 commit into from
Jan 28, 2019

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jonn-smith
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  • Released new data sources to google bucket and FTP site for both somatic and germline (clinical pipeline)
  • Updated data source download URL to point to the bucket for v1.6.20190124
  • Updated minimum version of data sources to v1.6.20190124.

With the release and these changes, the following issues are addressed:

Fixes #5259
Fixes #5428
Fixes #5429

- Updated data source download URL to point to the bucket for v1.6.20190124
- Updated minimum version of data sources to v1.6.20190124.
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@droazen droazen left a comment

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👍 merge when tests pass

@droazen droazen assigned jonn-smith and unassigned droazen Jan 28, 2019
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codecov-io commented Jan 28, 2019

Codecov Report

Merging #5614 into master will increase coverage by 0.055%.
The diff coverage is 100%.

@@               Coverage Diff               @@
##              master     #5614       +/-   ##
===============================================
+ Coverage     87.037%   87.092%   +0.055%     
- Complexity     31537     31815      +278     
===============================================
  Files           1930      1930               
  Lines         145455    146209      +754     
  Branches       16090     16244      +154     
===============================================
+ Hits          126600    127337      +737     
- Misses         12996     12997        +1     
- Partials        5859      5875       +16
Impacted Files Coverage Δ Complexity Δ
.../tools/funcotator/dataSources/DataSourceUtils.java 64.041% <ø> (ø) 48 <0> (ø) ⬇️
...ols/funcotator/FuncotatorDataSourceDownloader.java 66.197% <100%> (ø) 14 <0> (ø) ⬇️
...bender/tools/copynumber/CallCopyRatioSegments.java 93.333% <0%> (-0.784%) 11% <0%> (+5%)
...lotypecaller/readthreading/ReadThreadingGraph.java 88.608% <0%> (-0.253%) 144% <0%> (-1%)
...llbender/tools/copynumber/PreprocessIntervals.java 100% <0%> (ø) 34% <0%> (+15%) ⬆️
...notyper/GenotypeCalculationArgumentCollection.java 100% <0%> (ø) 4% <0%> (+2%) ⬆️
...ls/copynumber/plotting/PlotDenoisedCopyRatios.java 100% <0%> (ø) 12% <0%> (+6%) ⬆️
...nder/utils/runtime/StreamingProcessController.java 67.773% <0%> (+0.474%) 33% <0%> (ø) ⬇️
...hellbender/tools/copynumber/AnnotateIntervals.java 98.246% <0%> (+0.627%) 23% <0%> (+11%) ⬆️
...transforms/markduplicates/MarkDuplicatesSpark.java 95.276% <0%> (+0.755%) 65% <0%> (+29%) ⬆️
... and 16 more

@droazen droazen merged commit 4097dfb into master Jan 28, 2019
@droazen droazen deleted the jts_datasource_swap_fix_and_downloader_update_5428 branch January 28, 2019 21:51
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3 participants