Code

Fixes dropped AS_QD bug#6168

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droazen merged 11 commits intomasterbroadinstitute/gatk:masterfrom

ldg_fixAS_QDfromGenotypesbroadinstitute/gatk:ldg_fixAS_QDfromGenotypesCopy head branch name to clipboard

Oct 3, 2019

Commits

Commits on Sep 18, 2019

• Replace dropped AS_QD annotations for calculations based on AS_QUAL from

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• Square with David's fix and more comments

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  9f935c0

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Commits on Sep 19, 2019

• I forget why the OxoG test asks for allele-specific annotations, but

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Commits on Sep 20, 2019

• Turn tests back on :-P

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  e880cc3

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Commits on Sep 24, 2019

• Fix attribute check

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  7635ece

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• Update magic index for annotation raw keys

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  04e22eb

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Commits on Sep 25, 2019

• Rectify attributes that don't have to exist versus attributes that must

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Commits on Oct 2, 2019

• More elegant handling of multiple raw keys

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Commits on Oct 3, 2019

• Typo (also rerun tests)

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  11cfcd2

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• Comment

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  8a116e2

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• Missed some secondary checks

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  e82b3f8

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