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uniqify PG IDs in FilterAlignmentArtifacts #6304

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Merged
merged 2 commits into from
Dec 6, 2019
Merged

uniqify PG IDs in FilterAlignmentArtifacts #6304

merged 2 commits into from
Dec 6, 2019

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davidbenjamin
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Closes #6287.

@takutosato I'm just doing what David Roazen told me to do in #6287.

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gatk-bot commented Dec 6, 2019

Travis reported job failures from build 28299
Failures in the following jobs:

Test Type JDK Job ID Logs
unit openjdk11 28299.13 logs
unit openjdk8 28299.3 logs

@@ -44,7 +44,7 @@ protected HaplotypeBAMDestination(SAMFileHeader sourceHeader, final String haplo
readGroups.add(rgRec);
bamOutputHeader.setReadGroups(readGroups);
final List<SAMProgramRecord> programRecords = new ArrayList<>(sourceHeader.getProgramRecords());
programRecords.add(new SAMProgramRecord("HalpotypeBAMWriter"));
programRecords.add(new SAMProgramRecord("HaplotypeBAMWriter"));
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This is an amazing typo catch

@davidbenjamin davidbenjamin merged commit 74418c3 into master Dec 6, 2019
@davidbenjamin davidbenjamin deleted the db_pg_ids branch December 6, 2019 19:16
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