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Use chicken in vignettes/README #12

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Merged
merged 15 commits into from
Jun 19, 2023
Merged

Use chicken in vignettes/README #12

merged 15 commits into from
Jun 19, 2023

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stephenturner
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This PR changes out previous examples, README, vignettes, etc. to use the chicken genome, transcript db, and org db, all of which already exist in Bioconductor and can be installed with BiocManager.

Fixes #11, sets up for a manuscript describing tfboot.

@tabbzi @AlexanderTitus tagging you for code review for awareness only. Once I have all CI/CD checks passing ✅ I'm going to merge this in.

Local devtools::check() is clean

── R CMD check results ──────────────────────────────────────────────────────────────────────────────────────────────────── tfboot 0.2.0 ────
Duration: 1m 55.3s

0 errors ✔ | 0 warnings ✔ | 0 notes ✔

R CMD check succeeded

@stephenturner stephenturner merged commit 651fb94 into main Jun 19, 2023
@stephenturner stephenturner deleted the scratch branch June 19, 2023 14:35
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Rewrite examples and vignettes using an organism available on bioconductor
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