bsllmner-mk2

• the original
• paper

Development

mkdir ollama-data
chmod 777 ollama-data
docker compose up -d --build

docker compose exec ollama ollama pull llama3.1:70b
docker compose exec app bsllmner2 --debug --bs-entries ./tests/test-data/cell_line_example.biosample.json
docker compose exec app bsllmner2 --debug --model deepseek-r1:70b --bs-entries ./tests/test-data/cell_line_example.biosample.json

• Test data
  • https://zenodo.org/records/14881142
  • https://zenodo.org/records/14643285