Updating workflows/VGP-assembly-v2/Assembly-Hifi-only-VGP3 from 0.2.8 to 0.2.9 #774

gxydevbot · 2025-03-31T04:34:29Z

Hello! This is an automated update of the following workflow: workflows/VGP-assembly-v2/Assembly-Hifi-only-VGP3. I created this PR because I think one or more of the component tools are out of date, i.e. there is a newer version available on the ToolShed.

By comparing with the latest versions available on the ToolShed, it seems the following tools are outdated:

toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.24.0+galaxy0 should be updated to toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.25.0+galaxy0

The workflow release number has been updated from 0.2.8 to 0.2.9.

If you want to skip this change, close this PR without deleting the branch. It will be reopened if another change is detected.
Any commit from another author than 'planemo-autoupdate' will prevent more auto-updates.
To ignore manual changes and allow autoupdates, delete the branch.

… to 0.2.9

gxydevbot · 2025-04-07T04:22:31Z

There are new updates, they have been integrated to the PR, check the file diff.

github-actions · 2025-04-07T04:43:11Z

Test Results (powered by Planemo)

Test Summary

Test State	Count
Total	1
Passed	0
Error	1
Failure	0
Skipped	0

Errored Tests

❌ Assembly-Hifi-only-VGP3.ga_0

Execution Problem:

Failed to run workflow, at least one job is in [error] state.

Workflow invocation details

Invocation Messages

Steps

Step 1: Pacbio Reads Collection:
- step_state: scheduled
Step 2: Meryl Database:
- step_state: scheduled
Step 11: Name of alternate assembly:
- step_state: scheduled

Step 12: toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/5.0+galaxy0:

step_state: scheduled

Jobs

Job 1:

Job state is ok

Command Line:

ln -f -s '/tmp/tmpsnxtmjff/files/3/7/f/dataset_37f3b5d2-c3d8-4ee1-8c1f-7a1185d7901c.dat' 'yeast_reads_sub1_fastq_gz.fq.gz' &&  cutadapt  -j=${GALAXY_SLOTS:-4}   -b 'ATCTCTCTCAACAACAACAACGGAGGAGGAGGAAAAGAGAGAGAT'   -b 'ATCTCTCTCTTTTCCTCCTCCTCCGTTGTTGTTGTTGAGAGAGAT'    --error-rate=0.1 --times=1 --overlap=35    --action=trim --rc     --discard-trimmed   --minimum-length=1      --json=stats.json -o 'out1.fq.gz'  'yeast_reads_sub1_fastq_gz.fq.gz'  > report.txt

Exit Code:

```
0
```

Traceback:

Job Parameters:

Job parameter	Parameter value
__input_ext	`"input"`
__workflow_invocation_uuid__	`"94f0d504136911f0aeed7c1e5239dff8"`
adapter_options	`{"action": "trim", "error_rate": "0.1", "match_read_wildcards": false, "no_indels": false, "no_match_adapter_wildcards": true, "overlap": "35", "revcomp": true, "times": "1"}`
chromInfo	`"/tmp/tmpsnxtmjff/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"`
dbkey	`"?"`
filter_options	`{"discard_casava": false, "discard_trimmed": true, "discard_untrimmed": false, "max_average_error_rate": null, "max_expected_errors": null, "max_n": null, "maximum_length": null, "maximum_length2": null, "minimum_length": "1", "minimum_length2": null, "pair_filter": "any"}`
library	{"__current_case__": 0, "input_1": {"values": [{"id": 1, "src": "dce"}]}, "r1": {"adapters": [], "anywhere_adapters": [{"__index__": 0, "adapter_source": {"__current_case__": 0, "adapter": "ATCTCTCTCAACAACAACAACGGAGGAGGAGGAAAAGAGAGAGAT", "adapter_name": "", "adapter_source_list": "user"}, "single_noindels": false}, {"__index__": 1, "adapter_source": {"__current_case__": 0, "adapter": "ATCTCTCTCTTTTCCTCCTCCTCCGTTGTTGTTGTTGAGAGAGAT", "adapter_name": "", "adapter_source_list": "user"}, "single_noindels": false}], "front_adapters": []}, "type": "single"}
other_trimming_options	`{"cut": "0", "cut2": "0", "nextseq_trim": "0", "poly_a": false, "quality_cutoff": "0", "quality_cutoff2": "", "shorten_options": {"__current_case__": 1, "shorten_values": "False"}, "shorten_options_r2": {"__current_case__": 1, "shorten_values_r2": "False"}, "trim_n": false}`
output_selector	`["report", "json_stats"]`
read_mod_options	`{"length_tag": "", "rename": "", "strip_suffix": "", "zero_cap": false}`

Step 13: toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_grep_tool/9.5+galaxy0:

step_state: scheduled

Jobs

Job 1:

Job state is ok

Command Line:

grep -G -A 0 -B 0 --no-group-separator  -i -- 'Haploid' '/tmp/tmpsnxtmjff/files/c/8/9/dataset_c89c349c-6569-40e7-82de-68622b8414fc.dat' > '/tmp/tmpsnxtmjff/job_working_directory/000/6/outputs/dataset_2ad8d29d-58d0-43e8-b932-838e4dc3a533.dat'

Exit Code:

```
0
```

Traceback:

Job Parameters:

Job parameter	Parameter value
__input_ext	`"input"`
__workflow_invocation_uuid__	`"94f0d504136911f0aeed7c1e5239dff8"`
case_sensitive	`"-i"`
chromInfo	`"/tmp/tmpsnxtmjff/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"`
color	`"NOCOLOR"`
dbkey	`"?"`
invert	`""`
lines_after	`"0"`
lines_before	`"0"`
regex_type	`"-G"`
url_paste	`"Haploid"`

Step 14: toolshed.g2.bx.psu.edu/repos/iuc/pick_value/pick_value/0.2.0:

step_state: scheduled

Jobs

Job 1:

Job state is ok

Command Line:

```
cd ../; python _evaluate_expression_.py
```

Exit Code:

```
0
```

Traceback:

Job Parameters:

Job parameter	Parameter value
__input_ext	`"input"`
__workflow_invocation_uuid__	`"94f0d504136911f0aeed7c1e5239dff8"`
chromInfo	`"/tmp/tmpsnxtmjff/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"`
dbkey	`"?"`
style_cond	`{"__current_case__": 0, "pick_style": "first", "type_cond": {"__current_case__": 1, "param_type": "integer", "pick_from": [{"__index__": 0, "value": "32"}, {"__index__": 1, "value": "37"}]}}`

Step 15: toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/2.1:

step_state: scheduled

Jobs

Job 1:

Job state is ok

Command Line:

python '/tmp/shed_dir/toolshed.g2.bx.psu.edu/repos/devteam/column_maker/aff5135563c6/column_maker/column_maker.py' --column-types float,float,float,float,float,int  --file '/tmp/tmpsnxtmjff/job_working_directory/000/8/configs/tmpgftof_bz' --fail-on-non-existent-columns --fail-on-non-computable '/tmp/tmpsnxtmjff/files/f/7/f/dataset_f7fa96a5-7529-4b22-b8b1-e82f63c3a9c3.dat' '/tmp/tmpsnxtmjff/job_working_directory/000/8/outputs/dataset_38378c72-5851-4ec2-a7af-e1439479ccd9.dat'

Exit Code:

```
0
```

Standard Output:

c3*2
Computing 1 new columns with instructions ['c3*2;;']
Computed new column values for 100.00% of 1 lines written.

Traceback:

Job Parameters:

Job parameter	Parameter value
__input_ext	`"input"`
__workflow_invocation_uuid__	`"94f0d504136911f0aeed7c1e5239dff8"`
avoid_scientific_notation	`false`
chromInfo	`"/tmp/tmpsnxtmjff/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"`
dbkey	`"?"`
error_handling	`{"auto_col_types": true, "fail_on_non_existent_columns": true, "non_computable": {"__current_case__": 0, "action": "--fail-on-non-computable"}}`
ops	`{"__current_case__": 0, "expressions": [{"__index__": 0, "add_column": {"__current_case__": 0, "mode": "", "pos": ""}, "cond": "c3*2"}], "header_lines_select": "no"}`

Step 16: toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.27+galaxy3:

step_state: scheduled

Jobs

Job 1:

Job state is ok

Command Line:

die() { echo "$@" 1>&2 ; exit 1; } &&  mkdir multiqc_WDir &&   mkdir multiqc_WDir/cutadapt_0 &&     ln -s '/tmp/tmpsnxtmjff/files/9/2/3/dataset_923536ad-1b3a-44c8-93b2-cc33375576d0.dat' 'multiqc_WDir/cutadapt_0/yeast_reads_sub1_fastq_gz.txt' && sed -i.old 's/You are running/This is/' 'multiqc_WDir/cutadapt_0/yeast_reads_sub1_fastq_gz.txt' && grep -q "This is cutadapt" 'multiqc_WDir/cutadapt_0/yeast_reads_sub1_fastq_gz.txt' || die "'This is cutadapt' or 'You are running cutadapt' not found in the file" &&    multiqc multiqc_WDir --filename 'report'       && mkdir -p ./plots && ls -l ./report_data/ && cp ./report_data/*plot*.txt ./plots/ | true

Exit Code:

```
0
```

Standard Error:

/// MultiQC 🔍 v1.27

     version_check | MultiQC Version v1.28 now available!
       file_search | Search path: /tmp/tmpsnxtmjff/job_working_directory/000/9/working/multiqc_WDir

          cutadapt | Found 1 reports

     write_results | Data        : report_data
     write_results | Report      : report.html
           multiqc | MultiQC complete

Standard Output:

total 80
-rw-r--r-- 1 1001 118    97 Apr  7 04:35 cutadapt_filtered_reads_plot.txt
-rw-r--r-- 1 1001 118    66 Apr  7 04:35 cutadapt_trimmed_sequences_plot_default_Counts.txt
-rw-r--r-- 1 1001 118    70 Apr  7 04:35 cutadapt_trimmed_sequences_plot_default_Obs_Exp.txt
-rw-r--r-- 1 1001 118   396 Apr  7 04:35 multiqc.log
-rw-r--r-- 1 1001 118   124 Apr  7 04:35 multiqc_citations.txt
-rw-r--r-- 1 1001 118   222 Apr  7 04:35 multiqc_cutadapt.txt
-rw-r--r-- 1 1001 118 44090 Apr  7 04:35 multiqc_data.json
-rw-r--r-- 1 1001 118    79 Apr  7 04:35 multiqc_general_stats.txt
-rw-r--r-- 1 1001 118    29 Apr  7 04:35 multiqc_software_versions.txt
-rw-r--r-- 1 1001 118   193 Apr  7 04:35 multiqc_sources.txt

Traceback:

Job Parameters:

Job parameter	Parameter value
__input_ext	`"input"`
__workflow_invocation_uuid__	`"94f0d504136911f0aeed7c1e5239dff8"`
chromInfo	`"/tmp/tmpsnxtmjff/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"`
comment	`""`
dbkey	`"?"`
export	`false`
flat	`false`
image_content_input	`None`
results	`[{"__index__": 0, "software_cond": {"__current_case__": 5, "input": {"values": [{"id": 3, "src": "hdca"}]}, "software": "cutadapt"}}]`
saveLog	`"false"`
title	`""`

Step 17: toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/9.5+galaxy0:

step_state: scheduled

Jobs

Job 1:

Job state is ok

Command Line:

sed -r --sandbox -e '' -e 's/bp//g' -e '' -e 's/,//g' -e '' -e 's/([a-z])\s+([A-Z])/\1_\2/g' '/tmp/tmpsnxtmjff/files/2/a/d/dataset_2ad8d29d-58d0-43e8-b932-838e4dc3a533.dat' > '/tmp/tmpsnxtmjff/job_working_directory/000/10/outputs/dataset_0e34799c-8e0b-43ac-b90f-07090e6023b0.dat'

Exit Code:

```
0
```

Traceback:

Job Parameters:

Job parameter	Parameter value
__input_ext	`"input"`
__workflow_invocation_uuid__	`"94f0d504136911f0aeed7c1e5239dff8"`
chromInfo	`"/tmp/tmpsnxtmjff/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"`
dbkey	`"?"`
replacements	`[{"__index__": 0, "find_pattern": "bp", "replace_pattern": "", "sed_options": null}, {"__index__": 1, "find_pattern": ",", "replace_pattern": "", "sed_options": null}, {"__index__": 2, "find_pattern": "([a-z])\\s+([A-Z])", "replace_pattern": "\\1_\\2", "sed_options": null}]`

Step 18: Cut1:

step_state: scheduled

Jobs

Job 1:

Job state is ok

Command Line:

perl '/tmp/tmpsnxtmjff/galaxy-dev/tools/filters/cutWrapper.pl' '/tmp/tmpsnxtmjff/files/3/8/3/dataset_38378c72-5851-4ec2-a7af-e1439479ccd9.dat' 'c7' T '/tmp/tmpsnxtmjff/job_working_directory/000/11/outputs/dataset_ed114beb-25f5-40b7-9b5a-dab1a6534659.dat'

Exit Code:

```
0
```

Traceback:

Job Parameters:

Job parameter	Parameter value
__input_ext	`"tabular"`
__workflow_invocation_uuid__	`"94f0d504136911f0aeed7c1e5239dff8"`
chromInfo	`"/tmp/tmpsnxtmjff/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"`
columnList	`"c7"`
dbkey	`"?"`
delimiter	`"T"`

Step 19: Convert characters1:

step_state: scheduled

Jobs

Job 1:

Job state is ok

Command Line:

python /tmp/tmpsnxtmjff/galaxy-dev/tools/filters/convert_characters.py --strip --condense /tmp/tmpsnxtmjff/files/0/e/3/dataset_0e34799c-8e0b-43ac-b90f-07090e6023b0.dat s /tmp/tmpsnxtmjff/job_working_directory/000/12/outputs/dataset_bcb2bfbf-1091-40c9-b0e1-1b16d5216ecb.dat

Exit Code:

```
0
```

Traceback:

Job Parameters:

Job parameter	Parameter value
__input_ext	`"txt"`
__workflow_invocation_uuid__	`"94f0d504136911f0aeed7c1e5239dff8"`
chromInfo	`"/tmp/tmpsnxtmjff/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"`
condense	`true`
convert_from	`"s"`
dbkey	`"?"`
strip	`true`

Step 20: param_value_from_file:

step_state: scheduled

Jobs

Job 1:

Job state is ok

Command Line:

```
cd ../; python _evaluate_expression_.py
```

Exit Code:

```
0
```

Traceback:

Job Parameters:

Job parameter	Parameter value
__input_ext	`"tabular"`
__workflow_invocation_uuid__	`"94f0d504136911f0aeed7c1e5239dff8"`
chromInfo	`"/tmp/tmpsnxtmjff/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"`
dbkey	`"?"`
param_type	`"integer"`
remove_newlines	`true`

Step 3: Genomescope Summary:
- step_state: scheduled

Step 21: Cut1:

step_state: scheduled

Jobs

Job 1:

Job state is ok

Command Line:

perl '/tmp/tmpsnxtmjff/galaxy-dev/tools/filters/cutWrapper.pl' '/tmp/tmpsnxtmjff/files/b/c/b/dataset_bcb2bfbf-1091-40c9-b0e1-1b16d5216ecb.dat' 'c3' T '/tmp/tmpsnxtmjff/job_working_directory/000/14/outputs/dataset_5fd29540-4ea0-4b52-8bd7-404b60f487be.dat'

Exit Code:

```
0
```

Traceback:

Job Parameters:

Job parameter	Parameter value
__input_ext	`"tabular"`
__workflow_invocation_uuid__	`"94f0d504136911f0aeed7c1e5239dff8"`
chromInfo	`"/tmp/tmpsnxtmjff/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"`
columnList	`"c3"`
dbkey	`"?"`
delimiter	`"T"`

Step 22: Homozygous read coverage for Hifiasm:

step_state: scheduled

Jobs

Job 1:

Job state is ok

Command Line:

```
cd ../; python _evaluate_expression_.py
```

Exit Code:

```
0
```

Traceback:

Job Parameters:

Job parameter	Parameter value
__input_ext	`"input"`
__workflow_invocation_uuid__	`"94f0d504136911f0aeed7c1e5239dff8"`
chromInfo	`"/tmp/tmpsnxtmjff/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"`
dbkey	`"?"`
style_cond	`{"__current_case__": 0, "pick_style": "first", "type_cond": {"__current_case__": 1, "param_type": "integer", "pick_from": [{"__index__": 0, "value": null}, {"__index__": 1, "value": "21"}]}}`

Step 23: Estimated genome size:

step_state: scheduled

Jobs

Job 1:

Job state is ok

Command Line:

```
cd ../; python _evaluate_expression_.py
```

Exit Code:

```
0
```

Traceback:

Job Parameters:

Job parameter	Parameter value
__input_ext	`"tabular"`
__workflow_invocation_uuid__	`"94f0d504136911f0aeed7c1e5239dff8"`
chromInfo	`"/tmp/tmpsnxtmjff/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"`
dbkey	`"?"`
param_type	`"integer"`
remove_newlines	`true`

Step 24: toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.25.0+galaxy0:

step_state: scheduled

Jobs

Job 1:

Job state is ok

Command Line:

ln -s '/tmp/tmpsnxtmjff/files/0/a/b/dataset_0abb3867-ea56-47c3-8ccf-6330f7a46fc5.dat' input_0.fastqsanger.gz &&  hifiasm -t ${GALAXY_SLOTS:-1} -o output -f 32 -k 51 -w 51 -D 5.0 -N 100 -r 3 --max-kocc 20000 --rl-cut 1000 --sc-cut 10  -a 4 -z 0 -m 10000000 -p 100000 -n 3 -x 0.8 -y 0.2   --hom-cov 21 -l 0 -s 0.75 -O 1    --primary input_0.fastqsanger.gz 2> output.log  && mkdir noseq_files && mv *.noseq.gfa noseq_files

Exit Code:

```
0
```

Traceback:

Job Parameters:

Job parameter	Parameter value
__input_ext	`"fastqsanger.gz"`
__workflow_invocation_uuid__	`"94f0d504136911f0aeed7c1e5239dff8"`
advanced_options	`{"__current_case__": 1, "advanced_selector": "set", "correction_rounds": "3", "drop_kmers": "5.0", "hg_size": "", "hifiasm_kmer_length": "51", "max_kocc": "20000", "max_overlaps": "100", "min_hist_cnt": null, "rl_cut": "1000", "sc_cut": "10", "window_size": "51"}`
assembly_options	`{"__current_case__": 1, "adapter_length": "0", "assembly_selector": "set", "cleaning_rounds": "4", "disable_post_join": false, "hom_cov": "21", "ignore_error_corrected": false, "max_overlap": "0.8", "min_overlap": "0.2", "pop_contigs": "10000000", "pop_unitigs": "100000", "remove_tips": "3"}`
bins_out	`false`
chromInfo	`"/tmp/tmpsnxtmjff/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"`
dbkey	`"?"`
filter_bits	`"32"`
hic_partition	`{"__current_case__": 0, "hic_partition_selector": "blank"}`
log_out	`true`
mode	`{"__current_case__": 0, "mode_selector": "standard", "reads": {"values": [{"id": 2, "src": "hdca"}]}}`
ont_integration	`{"__current_case__": 0, "ont_integration_selector": "blank"}`
purge_options	`{"__current_case__": 1, "minimum_overlap": "1", "n_hap": null, "purge_level": "0", "purge_max": null, "purge_selector": "set", "similarity_threshold": "0.75"}`
scaffolding_options	`{"__current_case__": 0, "scaffold_selector": "blank"}`

Step 25: Raw Unitig Image:

step_state: scheduled

Jobs

Job 1:

Job state is ok

Command Line:

ln -s '/tmp/tmpsnxtmjff/files/8/b/0/dataset_8b07d5a7-213d-415f-b59f-0a8967dd4b7b.dat' input.gfa &&  export QT_QPA_PLATFORM='offscreen' && Bandage image input.gfa 'out.jpg' --height '2000' --nodewidth '25.0'

Exit Code:

```
0
```

Traceback:

Job Parameters:

Job parameter	Parameter value
__input_ext	`"input"`
__workflow_invocation_uuid__	`"94f0d504136911f0aeed7c1e5239dff8"`
chromInfo	`"/tmp/tmpsnxtmjff/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"`
dbkey	`"?"`
fontsize	`None`
height	`"2000"`
lengths	`false`
names	`false`
nodewidth	`"25.0"`
output_format	`"jpg"`
width	`None`

Step 26: toolshed.g2.bx.psu.edu/repos/bgruening/gfastats/gfastats/1.3.10+galaxy0:

step_state: scheduled

Jobs

Job 1:

Job state is ok

Command Line:

gfastats '/tmp/tmpsnxtmjff/files/e/a/3/dataset_ea3f5434-6e55-482a-bf95-5ed81d9bf978.dat' --discover-paths  -o dataset.gfa  --threads ${GALAXY_SLOTS:-8} && mv dataset* output_dataset

Exit Code:

```
0
```

Standard Output:

+++Assembly summary+++: 
# scaffolds: 3
Total scaffold length: 34014
Average scaffold length: 11338.00
Scaffold N50: 11612
Scaffold auN: 11441.29
Scaffold L50: 2
Largest scaffold: 12505
Smallest scaffold: 9897
# contigs: 3
Total contig length: 34014
Average contig length: 11338.00
Contig N50: 11612
Contig auN: 11441.29
Contig L50: 2
Largest contig: 12505
Smallest contig: 9897
# gaps in scaffolds: 0
Total gap length in scaffolds: 0
Average gap length in scaffolds: 0.00
Gap N50 in scaffolds: 0
Gap auN in scaffolds: 0.00
Gap L50 in scaffolds: 0
Largest gap in scaffolds: 0
Smallest gap in scaffolds: 0
Base composition (A:C:G:T): 9774:7208:7720:9312
GC content %: 43.89
# soft-masked bases: 0
# segments: 3
Total segment length: 34014
Average segment length: 11338.00
# gaps: 0
# paths: 3
# edges: 4
Average degree: 1.33
# connected components: 1
Largest connected component length: 34014
# dead ends: 3
# disconnected components: 0
Total length disconnected components: 0
# separated components: 1
# bubbles: 0
# circular segments: 0
# circular paths: 0

Traceback:

Job Parameters:

Job parameter	Parameter value
__input_ext	`"input"`
__workflow_invocation_uuid__	`"94f0d504136911f0aeed7c1e5239dff8"`
chromInfo	`"/tmp/tmpsnxtmjff/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"`
dbkey	`"?"`
mode_condition	`{"__current_case__": 0, "discover_paths": true, "homopolymer_compress": null, "output_condition": {"__current_case__": 4, "no_sequence": false, "out_format": "gfa", "terminal_overlaps_condition": {"__current_case__": 0, "terminal_overlaps_select": "no"}}, "remove_terminal_gaps": false, "selector": "manipulation", "sort": "", "swiss_army_knife": null}`
target_condition	`{"__current_case__": 0, "target_option": "false"}`

Step 27: toolshed.g2.bx.psu.edu/repos/bgruening/gfastats/gfastats/1.3.10+galaxy0:

step_state: scheduled

Jobs

Job 1:

Job state is ok

Command Line:

gfastats '/tmp/tmpsnxtmjff/files/4/8/0/dataset_4804068c-fbf2-4493-9a35-5e8ad5139507.dat' --discover-paths  -o dataset.gfa  --threads ${GALAXY_SLOTS:-8} && mv dataset* output_dataset

Exit Code:

```
0
```

Standard Output:

+++Assembly summary+++: 
# scaffolds: 84
Total scaffold length: 2052441
Average scaffold length: 24433.82
Scaffold N50: 22011
Scaffold auN: 34199.59
Scaffold L50: 31
Largest scaffold: 132684
Smallest scaffold: 15406
# contigs: 84
Total contig length: 2052441
Average contig length: 24433.82
Contig N50: 22011
Contig auN: 34199.59
Contig L50: 31
Largest contig: 132684
Smallest contig: 15406
# gaps in scaffolds: 0
Total gap length in scaffolds: 0
Average gap length in scaffolds: 0.00
Gap N50 in scaffolds: 0
Gap auN in scaffolds: 0.00
Gap L50 in scaffolds: 0
Largest gap in scaffolds: 0
Smallest gap in scaffolds: 0
Base composition (A:C:G:T): 627800:397884:399253:627504
GC content %: 38.84
# soft-masked bases: 0
# segments: 84
Total segment length: 2052441
Average segment length: 24433.82
# gaps: 0
# paths: 84
# edges: 8
Average degree: 0.10
# connected components: 2
Largest connected component length: 96664
# dead ends: 162
# disconnected components: 78
Total length disconnected components: 1895760
# separated components: 80
# bubbles: 0
# circular segments: 0
# circular paths: 0

Traceback:

Job Parameters:

Job parameter	Parameter value
__input_ext	`"input"`
__workflow_invocation_uuid__	`"94f0d504136911f0aeed7c1e5239dff8"`
chromInfo	`"/tmp/tmpsnxtmjff/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"`
dbkey	`"?"`
mode_condition	`{"__current_case__": 0, "discover_paths": true, "homopolymer_compress": null, "output_condition": {"__current_case__": 4, "no_sequence": false, "out_format": "gfa", "terminal_overlaps_condition": {"__current_case__": 0, "terminal_overlaps_select": "no"}}, "remove_terminal_gaps": false, "selector": "manipulation", "sort": "", "swiss_army_knife": null}`
target_condition	`{"__current_case__": 0, "target_option": "false"}`

Step 28: toolshed.g2.bx.psu.edu/repos/bgruening/gfastats/gfastats/1.3.10+galaxy0:

step_state: scheduled

Jobs

Job 1:

Job state is ok

Command Line:

gfastats '/tmp/tmpsnxtmjff/files/4/8/0/dataset_4804068c-fbf2-4493-9a35-5e8ad5139507.dat' --discover-paths  -o dataset.fasta --threads ${GALAXY_SLOTS:-8} && mv dataset* output_dataset

Exit Code:

```
0
```

Standard Output:

+++Assembly summary+++: 
# scaffolds: 84
Total scaffold length: 2052441
Average scaffold length: 24433.82
Scaffold N50: 22011
Scaffold auN: 34199.59
Scaffold L50: 31
Largest scaffold: 132684
Smallest scaffold: 15406
# contigs: 84
Total contig length: 2052441
Average contig length: 24433.82
Contig N50: 22011
Contig auN: 34199.59
Contig L50: 31
Largest contig: 132684
Smallest contig: 15406
# gaps in scaffolds: 0
Total gap length in scaffolds: 0
Average gap length in scaffolds: 0.00
Gap N50 in scaffolds: 0
Gap auN in scaffolds: 0.00
Gap L50 in scaffolds: 0
Largest gap in scaffolds: 0
Smallest gap in scaffolds: 0
Base composition (A:C:G:T): 627800:397884:399253:627504
GC content %: 38.84
# soft-masked bases: 0
# segments: 84
Total segment length: 2052441
Average segment length: 24433.82
# gaps: 0
# paths: 84
# edges: 8
Average degree: 0.10
# connected components: 2
Largest connected component length: 96664
# dead ends: 162
# disconnected components: 78
Total length disconnected components: 1895760
# separated components: 80
# bubbles: 0
# circular segments: 0
# circular paths: 0

Traceback:

Job Parameters:

Job parameter	Parameter value
__input_ext	`"input"`
__workflow_invocation_uuid__	`"94f0d504136911f0aeed7c1e5239dff8"`
chromInfo	`"/tmp/tmpsnxtmjff/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"`
dbkey	`"?"`
mode_condition	`{"__current_case__": 0, "discover_paths": true, "homopolymer_compress": null, "output_condition": {"__current_case__": 0, "line_length": null, "out_format": "fasta"}, "remove_terminal_gaps": false, "selector": "manipulation", "sort": "", "swiss_army_knife": null}`
target_condition	`{"__current_case__": 0, "target_option": "false"}`

Step 29: toolshed.g2.bx.psu.edu/repos/bgruening/gfastats/gfastats/1.3.10+galaxy0:

step_state: scheduled

Jobs

Job 1:

Job state is ok

Command Line:

gfastats '/tmp/tmpsnxtmjff/files/e/a/3/dataset_ea3f5434-6e55-482a-bf95-5ed81d9bf978.dat' --discover-paths  -o dataset.fasta --threads ${GALAXY_SLOTS:-8} && mv dataset* output_dataset

Exit Code:

```
0
```

Standard Output:

+++Assembly summary+++: 
# scaffolds: 3
Total scaffold length: 34014
Average scaffold length: 11338.00
Scaffold N50: 11612
Scaffold auN: 11441.29
Scaffold L50: 2
Largest scaffold: 12505
Smallest scaffold: 9897
# contigs: 3
Total contig length: 34014
Average contig length: 11338.00
Contig N50: 11612
Contig auN: 11441.29
Contig L50: 2
Largest contig: 12505
Smallest contig: 9897
# gaps in scaffolds: 0
Total gap length in scaffolds: 0
Average gap length in scaffolds: 0.00
Gap N50 in scaffolds: 0
Gap auN in scaffolds: 0.00
Gap L50 in scaffolds: 0
Largest gap in scaffolds: 0
Smallest gap in scaffolds: 0
Base composition (A:C:G:T): 9774:7208:7720:9312
GC content %: 43.89
# soft-masked bases: 0
# segments: 3
Total segment length: 34014
Average segment length: 11338.00
# gaps: 0
# paths: 3
# edges: 4
Average degree: 1.33
# connected components: 1
Largest connected component length: 34014
# dead ends: 3
# disconnected components: 0
Total length disconnected components: 0
# separated components: 1
# bubbles: 0
# circular segments: 0
# circular paths: 0

Traceback:

Job Parameters:

Job parameter	Parameter value
__input_ext	`"input"`
__workflow_invocation_uuid__	`"94f0d504136911f0aeed7c1e5239dff8"`
chromInfo	`"/tmp/tmpsnxtmjff/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"`
dbkey	`"?"`
mode_condition	`{"__current_case__": 0, "discover_paths": true, "homopolymer_compress": null, "output_condition": {"__current_case__": 0, "line_length": null, "out_format": "fasta"}, "remove_terminal_gaps": false, "selector": "manipulation", "sort": "", "swiss_army_knife": null}`
target_condition	`{"__current_case__": 0, "target_option": "false"}`

Step 30: toolshed.g2.bx.psu.edu/repos/bgruening/gfastats/gfastats/1.3.10+galaxy0:

step_state: scheduled

Jobs

Job 1:

Job state is ok

Command Line:

gfastats '/tmp/tmpsnxtmjff/files/4/8/0/dataset_4804068c-fbf2-4493-9a35-5e8ad5139507.dat' 2288021 --nstar-report --locale en_US.UTF-8 --discover-paths --tabular > '/tmp/tmpsnxtmjff/job_working_directory/000/23/outputs/dataset_d006814c-ab5d-4a42-a87e-7456331889aa.dat' --threads ${GALAXY_SLOTS:-8}

Exit Code:

```
0
```

Traceback:

Job Parameters:

Job parameter	Parameter value
__input_ext	`"input"`
__workflow_invocation_uuid__	`"94f0d504136911f0aeed7c1e5239dff8"`
chromInfo	`"/tmp/tmpsnxtmjff/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"`
dbkey	`"?"`
mode_condition	`{"__current_case__": 1, "discover_paths": true, "locale": true, "selector": "statistics", "statistics_condition": {"__current_case__": 2, "expected_genomesize": "2288021", "selector": "assembly"}, "tabular": true}`
target_condition	`{"__current_case__": 0, "target_option": "false"}`

Step 4: Bits for Hifiasm bloom filter:
- step_state: scheduled

Step 31: toolshed.g2.bx.psu.edu/repos/bgruening/gfastats/gfastats/1.3.10+galaxy0:

step_state: scheduled

Jobs

Job 1:

Job state is ok

Command Line:

gfastats '/tmp/tmpsnxtmjff/files/e/a/3/dataset_ea3f5434-6e55-482a-bf95-5ed81d9bf978.dat' 2288021 --nstar-report --locale en_US.UTF-8 --discover-paths --tabular > '/tmp/tmpsnxtmjff/job_working_directory/000/24/outputs/dataset_090c15dd-fbca-4962-b077-e92dc6e8f5a5.dat' --threads ${GALAXY_SLOTS:-8}

Exit Code:

```
0
```

Traceback:

Job Parameters:

Job parameter	Parameter value
__input_ext	`"input"`
__workflow_invocation_uuid__	`"94f0d504136911f0aeed7c1e5239dff8"`
chromInfo	`"/tmp/tmpsnxtmjff/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"`
dbkey	`"?"`
mode_condition	`{"__current_case__": 1, "discover_paths": true, "locale": true, "selector": "statistics", "statistics_condition": {"__current_case__": 2, "expected_genomesize": "2288021", "selector": "assembly"}, "tabular": true}`
target_condition	`{"__current_case__": 0, "target_option": "false"}`

Step 32: toolshed.g2.bx.psu.edu/repos/bgruening/gfastats/gfastats/1.3.10+galaxy0:

step_state: scheduled

Jobs

Job 1:

Job state is ok

Command Line:

gfastats '/tmp/tmpsnxtmjff/files/4/8/0/dataset_4804068c-fbf2-4493-9a35-5e8ad5139507.dat' --out-size c  --discover-paths --tabular > '/tmp/tmpsnxtmjff/job_working_directory/000/25/outputs/dataset_9c7e58e8-1007-47f1-a8ff-0adc0b475e31.dat' --threads ${GALAXY_SLOTS:-8}

Exit Code:

```
0
```

Traceback:

Job Parameters:

Job parameter	Parameter value
__input_ext	`"input"`
__workflow_invocation_uuid__	`"94f0d504136911f0aeed7c1e5239dff8"`
chromInfo	`"/tmp/tmpsnxtmjff/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"`
dbkey	`"?"`
mode_condition	`{"__current_case__": 1, "discover_paths": true, "locale": false, "selector": "statistics", "statistics_condition": {"__current_case__": 0, "out_size": "c", "selector": "size"}, "tabular": true}`
target_condition	`{"__current_case__": 0, "target_option": "false"}`

Step 33: toolshed.g2.bx.psu.edu/repos/bgruening/gfastats/gfastats/1.3.10+galaxy0:

step_state: scheduled

Jobs

Job 1:

Job state is ok

Command Line:

gfastats '/tmp/tmpsnxtmjff/files/e/a/3/dataset_ea3f5434-6e55-482a-bf95-5ed81d9bf978.dat' --out-size c  --discover-paths --tabular > '/tmp/tmpsnxtmjff/job_working_directory/000/26/outputs/dataset_604bd47c-cdeb-45e4-af82-404eec2242ea.dat' --threads ${GALAXY_SLOTS:-8}

Exit Code:

```
0
```

Traceback:

Job Parameters:

Job parameter	Parameter value
__input_ext	`"input"`
__workflow_invocation_uuid__	`"94f0d504136911f0aeed7c1e5239dff8"`
chromInfo	`"/tmp/tmpsnxtmjff/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"`
dbkey	`"?"`
mode_condition	`{"__current_case__": 1, "discover_paths": true, "locale": false, "selector": "statistics", "statistics_condition": {"__current_case__": 0, "out_size": "c", "selector": "size"}, "tabular": true}`
target_condition	`{"__current_case__": 0, "target_option": "false"}`

Step 34: toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.8.0+galaxy1:

step_state: scheduled

Jobs

Job 1:

Job state is error

Traceback:

Job Parameters:

Job parameter	Parameter value
__input_ext	`"input"`
__workflow_invocation_uuid__	`"94f0d504136911f0aeed7c1e5239dff8"`
adv	`{"contig_break": "10", "evalue": "0.001", "limit": "3"}`
busco_mode	`{"__current_case__": 0, "mode": "geno", "use_augustus": {"__current_case__": 0, "use_augustus_selector": "metaeuk"}}`
cached_db	`"v5"`
chromInfo	`"/tmp/tmpsnxtmjff/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"`
dbkey	`"?"`
lineage	`{"__current_case__": 1, "lineage_dataset": "vertebrata_odb10", "lineage_mode": "select_lineage"}`
lineage_conditional	`{"__current_case__": 0, "cached_db": {"__class__": "ConnectedValue"}, "selector": "cached"}`
outputs	`["short_summary", "missing", "image", "gff"]`
test	`None`

Step 35: toolshed.g2.bx.psu.edu/repos/iuc/merqury/merqury/1.3+galaxy4:

step_state: scheduled

Jobs

Job 1:

Job state is ok

Command Line:

mkdir -p output_files && mkdir -p read-db.meryl && tar -zxf /tmp/tmpsnxtmjff/files/0/9/0/dataset_09033bfe-c0c4-4e00-a918-09f1955ba7cb.dat -C read-db.meryl --strip-components=1 && ln -s '/tmp/tmpsnxtmjff/files/1/0/7/dataset_107adc7e-f9da-4088-b6bc-68478a4bc832.dat' assembly_01.fasta && ln -s '/tmp/tmpsnxtmjff/files/2/d/5/dataset_2d5a2d31-28d0-427a-bf7d-13a6644a5014.dat' assembly_02.fasta && merqury.sh read-db.meryl assembly_01.fasta assembly_02.fasta output_merqury &> /tmp/tmpsnxtmjff/job_working_directory/000/28/outputs/dataset_5a209bf9-529b-44a7-8aa7-fa87c29eccdd.dat && mv output_merqury* output_files && find . -maxdepth 1 -name 'assembly_only*' -type f -print0 | xargs -0r mv -t output_files  && sed -i '1s/^/assembly\tk-mer set\tsolid k-mers in assembly\tsolid k-mers in reads\tcompleteness %\n/' 'output_files/output_merqury.completeness.stats' && sed -i '1s/^/assembly\tunique k-mers\tcommon k-mers\tQV\terror rate\n/' 'output_files/output_merqury.qv'

Exit Code:

```
0
```

Traceback:

Job Parameters:

Job parameter	Parameter value
__input_ext	`"input"`
__workflow_invocation_uuid__	`"94f0d504136911f0aeed7c1e5239dff8"`
chromInfo	`"/tmp/tmpsnxtmjff/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"`
dbkey	`"?"`
label	`"output_merqury"`
mode	`{"__current_case__": 0, "assembly_options": {"__current_case__": 1, "assembly_01": {"values": [{"id": 28, "src": "hda"}]}, "assembly_02": {"values": [{"id": 29, "src": "hda"}]}, "number_assemblies": "two"}, "meryldb_F1": {"values": [{"id": 1, "src": "hda"}]}, "options": "default"}`
output_add_headers	`true`
output_selector	`["qv", "plots", "stats", "log", "hist"]`

Step 36: toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.5+galaxy0:

step_state: scheduled

Jobs

Job 1:

Job state is ok

Command Line:

env -i $(which awk) --sandbox -v FS='	' -v OFS='	' --re-interval -f '/tmp/tmpsnxtmjff/job_working_directory/000/29/configs/tmptw4g9o77' '/tmp/tmpsnxtmjff/files/d/0/0/dataset_d006814c-ab5d-4a42-a87e-7456331889aa.dat' > '/tmp/tmpsnxtmjff/job_working_directory/000/29/outputs/dataset_336ac91c-c329-4e1c-aef1-5ec9423ae2b6.dat'

Exit Code:

```
0
```

Traceback:

Job Parameters:

Job parameter	Parameter value
__input_ext	`"input"`
__workflow_invocation_uuid__	`"94f0d504136911f0aeed7c1e5239dff8"`
chromInfo	`"/tmp/tmpsnxtmjff/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"`
code	`"BEGIN{print \"Metric\\tPrimary\"}; {print}; \n"`
dbkey	`"?"`

Step 37: toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.5+galaxy0:

step_state: scheduled

Jobs

Job 1:

Job state is ok

Command Line:

env -i $(which awk) --sandbox -v FS='	' -v OFS='	' --re-interval -f '/tmp/tmpsnxtmjff/job_working_directory/000/30/configs/tmpfyj_ic9w' '/tmp/tmpsnxtmjff/files/0/9/0/dataset_090c15dd-fbca-4962-b077-e92dc6e8f5a5.dat' > '/tmp/tmpsnxtmjff/job_working_directory/000/30/outputs/dataset_4d008996-f361-4d4e-a4ca-0dd0d51698a5.dat'

Exit Code:

```
0
```

Traceback:

Job Parameters:

Job parameter	Parameter value
__input_ext	`"input"`
__workflow_invocation_uuid__	`"94f0d504136911f0aeed7c1e5239dff8"`
chromInfo	`"/tmp/tmpsnxtmjff/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"`
code	`"BEGIN{print \"Metric\\tAlternate\"}; {print}; \n"`
dbkey	`"?"`

Step 38: Data Prep Primary:

step_state: scheduled

Subworkflow Steps

Step 1: gfa_stats:
- step_state: scheduled

Step 2: sort1:

step_state: scheduled

Jobs

Job 1:

Job state is ok

Command Line:

python '/tmp/tmpsnxtmjff/galaxy-dev/tools/filters/sorter.py'  --input='/tmp/tmpsnxtmjff/files/9/c/7/dataset_9c7e58e8-1007-47f1-a8ff-0adc0b475e31.dat' --output='/tmp/tmpsnxtmjff/job_working_directory/000/31/outputs/dataset_1c081761-e408-4fe6-ba8d-5922d7651067.dat'    --key=2,2nr   --header 0

Exit Code:

```
0
```

Traceback:

Job Parameters:

Job parameter	Parameter value
__input_ext	`"tabular"`
__workflow_invocation_uuid__	`"94f0d505136911f0aeed7c1e5239dff8"`
chromInfo	`"/tmp/tmpsnxtmjff/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"`
column	`"2"`
column_set	`[]`
dbkey	`"?"`
header_lines	`"0"`
order	`"DESC"`
style	`"num"`

Step 3: toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.5+galaxy0:

step_state: scheduled

Jobs

Job 1:

Job state is ok

Command Line:

env -i $(which awk) --sandbox -v FS='	' -v OFS='	' --re-interval -f '/tmp/tmpsnxtmjff/job_working_directory/000/32/configs/tmpz1yfk3ip' '/tmp/tmpsnxtmjff/files/1/c/0/dataset_1c081761-e408-4fe6-ba8d-5922d7651067.dat' > '/tmp/tmpsnxtmjff/job_working_directory/000/32/outputs/dataset_6e144ffd-6eee-44a2-b215-682ffbf3ea7e.dat'

Exit Code:

```
0
```

Traceback:

Job Parameters:

Job parameter	Parameter value
__input_ext	`"input"`
__workflow_invocation_uuid__	`"94f0d505136911f0aeed7c1e5239dff8"`
chromInfo	`"/tmp/tmpsnxtmjff/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"`
code	`"{total += $2; $3 = total}1"`
dbkey	`"?"`

Step 4: toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.8+galaxy0:

step_state: scheduled

Jobs

Job 1:

Job state is ok

Command Line:

datamash         absmax 3 < /tmp/tmpsnxtmjff/files/6/e/1/dataset_6e144ffd-6eee-44a2-b215-682ffbf3ea7e.dat > '/tmp/tmpsnxtmjff/job_working_directory/000/33/outputs/dataset_7c002009-9cc6-4020-bbf4-b2d1695f0905.dat'

Exit Code:

```
0
```

Traceback:

Job Parameters:

Job parameter	Parameter value
__input_ext	`"input"`
__workflow_invocation_uuid__	`"94f0d505136911f0aeed7c1e5239dff8"`
chromInfo	`"/tmp/tmpsnxtmjff/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"`
dbkey	`"?"`
grouping	`""`
header_in	`false`
header_out	`false`
ignore_case	`false`
narm	`false`
need_sort	`false`
operations	`[{"__index__": 0, "op_column": "3", "op_name": "absmax"}]`
print_full_line	`false`

Step 5: toolshed.g2.bx.psu.edu/repos/devteam/add_value/addValue/1.0.1:

step_state: scheduled

Jobs

Job 1:

Job state is ok

Command Line:

perl /tmp/shed_dir/toolshed.g2.bx.psu.edu/repos/devteam/add_value/023f0a3760b3/add_value/fixedValueColumn.pl "/tmp/tmpsnxtmjff/files/6/e/1/dataset_6e144ffd-6eee-44a2-b215-682ffbf3ea7e.dat" "/tmp/tmpsnxtmjff/job_working_directory/000/34/outputs/dataset_5099bdb9-bb80-4a12-86b9-a7684827076a.dat" "1" "yes"

Exit Code:

```
0
```

Traceback:

Job Parameters:

Job parameter	Parameter value
__input_ext	`"input"`
__workflow_invocation_uuid__	`"94f0d505136911f0aeed7c1e5239dff8"`
chromInfo	`"/tmp/tmpsnxtmjff/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"`
dbkey	`"?"`
exp	`"1"`
iterate	`"yes"`

Step 6: param_value_from_file:

step_state: scheduled

Jobs

Job 1:

Job state is ok

Command Line:

```
cd ../; python _evaluate_expression_.py
```

Exit Code:

```
0
```

Traceback:

Job Parameters:

Job parameter	Parameter value
__input_ext	`"tabular"`
__workflow_invocation_uuid__	`"94f0d505136911f0aeed7c1e5239dff8"`
chromInfo	`"/tmp/tmpsnxtmjff/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"`
dbkey	`"?"`
param_type	`"integer"`
remove_newlines	`true`

Step 7: toolshed.g2.bx.psu.edu/repos/iuc/compose_text_param/compose_text_param/0.1.1:

step_state: scheduled

Jobs

Job 1:

Job state is ok

Command Line:

```
cd ../; python _evaluate_expression_.py
```

Exit Code:

```
0
```

Traceback:

Job Parameters:

Job parameter	Parameter value
__input_ext	`"input"`
__workflow_invocation_uuid__	`"94f0d505136911f0aeed7c1e5239dff8"`
chromInfo	`"/tmp/tmpsnxtmjff/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"`
components	`[{"__index__": 0, "param_type": {"__current_case__": 0, "component_value": "c3/", "select_param_type": "text"}}, {"__index__": 1, "param_type": {"__current_case__": 1, "component_value": "2052441", "select_param_type": "integer"}}]`
dbkey	`"?"`

Step 8: toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/2.1:

step_state: scheduled

Jobs

Job 1:

Job state is ok

Command Line:

python '/tmp/shed_dir/toolshed.g2.bx.psu.edu/repos/devteam/column_maker/aff5135563c6/column_maker/column_maker.py' --column-types str,int,int,int  --file '/tmp/tmpsnxtmjff/job_working_directory/000/46/configs/tmpjgo5z2rk' --fail-on-non-existent-columns --fail-on-non-computable '/tmp/tmpsnxtmjff/files/5/0/9/dataset_5099bdb9-bb80-4a12-86b9-a7684827076a.dat' '/tmp/tmpsnxtmjff/job_working_directory/000/46/outputs/dataset_d9788a3e-8bdb-4f8a-8133-e7675a3cfcc1.dat'

Exit Code:

```
0
```

Standard Output:

c3/2052441
c2/1000000
c3/1000000
Computing 3 new columns with instructions ['c3/2052441;;', 'c2/1000000;;', 'c3/1000000;;']
Computed new column values for 100.00% of 84 lines written.

Traceback:

Job Parameters:

Job parameter	Parameter value
__input_ext	`"input"`
__workflow_invocation_uuid__	`"94f0d505136911f0aeed7c1e5239dff8"`
avoid_scientific_notation	`false`
chromInfo	`"/tmp/tmpsnxtmjff/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"`
dbkey	`"?"`
error_handling	`{"auto_col_types": true, "fail_on_non_existent_columns": true, "non_computable": {"__current_case__": 0, "action": "--fail-on-non-computable"}}`
ops	`{"__current_case__": 0, "expressions": [{"__index__": 0, "add_column": {"__current_case__": 0, "mode": "", "pos": ""}, "cond": "c3/2052441"}, {"__index__": 1, "add_column": {"__current_case__": 0, "mode": "", "pos": ""}, "cond": "c2/1000000"}, {"__index__": 2, "add_column": {"__current_case__": 0, "mode": "", "pos": ""}, "cond": "c3/1000000"}], "header_lines_select": "no"}`

Step 39: Data Prep Alternate:

step_state: scheduled

Subworkflow Steps

Step 1: gfa_stats:
- step_state: scheduled

Step 2: sort1:

step_state: scheduled

Jobs

Job 1:

Job state is ok

Command Line:

python '/tmp/tmpsnxtmjff/galaxy-dev/tools/filters/sorter.py'  --input='/tmp/tmpsnxtmjff/files/6/0/4/dataset_604bd47c-cdeb-45e4-af82-404eec2242ea.dat' --output='/tmp/tmpsnxtmjff/job_working_directory/000/36/outputs/dataset_9b64dc06-c889-46e3-aca1-952410ab45d0.dat'    --key=2,2nr   --header 0

Exit Code:

```
0
```

Traceback:

Job Parameters:

Job parameter	Parameter value
__input_ext	`"tabular"`
__workflow_invocation_uuid__	`"94f0d506136911f0aeed7c1e5239dff8"`
chromInfo	`"/tmp/tmpsnxtmjff/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"`
column	`"2"`
column_set	`[]`
dbkey	`"?"`
header_lines	`"0"`
order	`"DESC"`
style	`"num"`

Step 3: toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.5+galaxy0:

step_state: scheduled

Jobs

Job 1:

Job state is ok

Command Line:

env -i $(which awk) --sandbox -v FS='	' -v OFS='	' --re-interval -f '/tmp/tmpsnxtmjff/job_working_directory/000/37/configs/tmpw7g_amy0' '/tmp/tmpsnxtmjff/files/9/b/6/dataset_9b64dc06-c889-46e3-aca1-952410ab45d0.dat' > '/tmp/tmpsnxtmjff/job_working_directory/000/37/outputs/dataset_883035d4-db7d-44c6-b399-b449d5dba06a.dat'

Exit Code:

```
0
```

Traceback:

Job Parameters:

Job parameter	Parameter value
__input_ext	`"input"`
__workflow_invocation_uuid__	`"94f0d506136911f0aeed7c1e5239dff8"`
chromInfo	`"/tmp/tmpsnxtmjff/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"`
code	`"{total += $2; $3 = total}1"`
dbkey	`"?"`

Step 4: toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.8+galaxy0:

step_state: scheduled

Jobs

Job 1:

Job state is ok

Command Line:

datamash         absmax 3 < /tmp/tmpsnxtmjff/files/8/8/3/dataset_883035d4-db7d-44c6-b399-b449d5dba06a.dat > '/tmp/tmpsnxtmjff/job_working_directory/000/38/outputs/dataset_f21a26bf-66b2-4487-b6d4-4873604dfa67.dat'

Exit Code:

```
0
```

Traceback:

Job Parameters:

Job parameter	Parameter value
__input_ext	`"input"`
__workflow_invocation_uuid__	`"94f0d506136911f0aeed7c1e5239dff8"`
chromInfo	`"/tmp/tmpsnxtmjff/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"`
dbkey	`"?"`
grouping	`""`
header_in	`false`
header_out	`false`
ignore_case	`false`
narm	`false`
need_sort	`false`
operations	`[{"__index__": 0, "op_column": "3", "op_name": "absmax"}]`
print_full_line	`false`

Step 5: toolshed.g2.bx.psu.edu/repos/devteam/add_value/addValue/1.0.1:

step_state: scheduled

Jobs

Job 1:

Job state is ok

Command Line:

perl /tmp/shed_dir/toolshed.g2.bx.psu.edu/repos/devteam/add_value/023f0a3760b3/add_value/fixedValueColumn.pl "/tmp/tmpsnxtmjff/files/8/8/3/dataset_883035d4-db7d-44c6-b399-b449d5dba06a.dat" "/tmp/tmpsnxtmjff/job_working_directory/000/39/outputs/dataset_fa249960-d6f8-4bb0-a0d0-246f1458bf62.dat" "1" "yes"

Exit Code:

```
0
```

Traceback:

Job Parameters:

Job parameter	Parameter value
__input_ext	`"input"`
__workflow_invocation_uuid__	`"94f0d506136911f0aeed7c1e5239dff8"`
chromInfo	`"/tmp/tmpsnxtmjff/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"`
dbkey	`"?"`
exp	`"1"`
iterate	`"yes"`

Step 6: param_value_from_file:

step_state: scheduled

Jobs

Job 1:

Job state is ok

Command Line:

```
cd ../; python _evaluate_expression_.py
```

Exit Code:

```
0
```

Traceback:

Job Parameters:

Job parameter	Parameter value
__input_ext	`"tabular"`
__workflow_invocation_uuid__	`"94f0d506136911f0aeed7c1e5239dff8"`
chromInfo	`"/tmp/tmpsnxtmjff/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"`
dbkey	`"?"`
param_type	`"integer"`
remove_newlines	`true`

Step 7: toolshed.g2.bx.psu.edu/repos/iuc/compose_text_param/compose_text_param/0.1.1:

step_state: scheduled

Jobs

Job 1:

Job state is ok

Command Line:

```
cd ../; python _evaluate_expression_.py
```

Exit Code:

```
0
```

Traceback:

Job Parameters:

Job parameter	Parameter value
__input_ext	`"input"`
__workflow_invocation_uuid__	`"94f0d506136911f0aeed7c1e5239dff8"`
chromInfo	`"/tmp/tmpsnxtmjff/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"`
components	`[{"__index__": 0, "param_type": {"__current_case__": 0, "component_value": "c3/", "select_param_type": "text"}}, {"__index__": 1, "param_type": {"__current_case__": 1, "component_value": "34014", "select_param_type": "integer"}}]`
dbkey	`"?"`

Step 8: toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/2.1:

step_state: scheduled

Jobs

Job 1:

Job state is ok

Command Line:

python '/tmp/shed_dir/toolshed.g2.bx.psu.edu/repos/devteam/column_maker/aff5135563c6/column_maker/column_maker.py' --column-types str,int,int,int  --file '/tmp/tmpsnxtmjff/job_working_directory/000/47/configs/tmpcm2q9nor' --fail-on-non-existent-columns --fail-on-non-computable '/tmp/tmpsnxtmjff/files/f/a/2/dataset_fa249960-d6f8-4bb0-a0d0-246f1458bf62.dat' '/tmp/tmpsnxtmjff/job_working_directory/000/47/outputs/dataset_7531e3f5-f618-43b8-82b7-b4a6d72a189e.dat'

Exit Code:

```
0
```

Standard Output:

c3/34014
c2/1000000
c3/1000000
Computing 3 new columns with instructions ['c3/34014;;', 'c2/1000000;;', 'c3/1000000;;']
Computed new column values for 100.00% of 3 lines written.

Traceback:

Job Parameters:

Job parameter	Parameter value
__input_ext	`"input"`
__workflow_invocation_uuid__	`"94f0d506136911f0aeed7c1e5239dff8"`
avoid_scientific_notation	`false`
chromInfo	`"/tmp/tmpsnxtmjff/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"`
dbkey	`"?"`
error_handling	`{"auto_col_types": true, "fail_on_non_existent_columns": true, "non_computable": {"__current_case__": 0, "action": "--fail-on-non-computable"}}`
ops	`{"__current_case__": 0, "expressions": [{"__index__": 0, "add_column": {"__current_case__": 0, "mode": "", "pos": ""}, "cond": "c3/34014"}, {"__index__": 1, "add_column": {"__current_case__": 0, "mode": "", "pos": ""}, "cond": "c2/1000000"}, {"__index__": 2, "add_column": {"__current_case__": 0, "mode": "", "pos": ""}, "cond": "c3/1000000"}], "header_lines_select": "no"}`

Step 40: merqury_qv:

step_state: scheduled

Jobs

Job 1:

Job state is ok

Traceback:

Job Parameters:

Job parameter	Parameter value
__workflow_invocation_uuid__	`"94f0d504136911f0aeed7c1e5239dff8"`
input	`{"values": [{"id": 6, "src": "hdca"}]}`
which	`{"__current_case__": 1, "identifier": "output_merqury", "which_dataset": "by_identifier"}`

Step 5: Homozygous Read Coverage:
- step_state: scheduled

Step 41: output_merqury.spectra-cn.fl:

step_state: scheduled

Jobs

Job 1:

Job state is ok

Traceback:

Job Parameters:

Job parameter	Parameter value
__workflow_invocation_uuid__	`"94f0d504136911f0aeed7c1e5239dff8"`
input	`{"values": [{"id": 7, "src": "hdca"}]}`
which	`{"__current_case__": 1, "identifier": "output_merqury.spectra-cn.fl", "which_dataset": "by_identifier"}`

Step 42: output_merqury.spectra-asm.fl:

step_state: scheduled

Jobs

Job 1:

Job state is ok

Traceback:

Job Parameters:

Job parameter	Parameter value
__workflow_invocation_uuid__	`"94f0d504136911f0aeed7c1e5239dff8"`
input	`{"values": [{"id": 7, "src": "hdca"}]}`
which	`{"__current_case__": 1, "identifier": "output_merqury.spectra-asm.fl", "which_dataset": "by_identifier"}`

Step 43: output_merqury.assembly_01.spectra-cn.fl:

step_state: scheduled

Jobs

Job 1:

Job state is ok

Traceback:

Job Parameters:

Job parameter	Parameter value
__workflow_invocation_uuid__	`"94f0d504136911f0aeed7c1e5239dff8"`
input	`{"values": [{"id": 7, "src": "hdca"}]}`
which	`{"__current_case__": 1, "identifier": "output_merqury.assembly_01.spectra-cn.fl", "which_dataset": "by_identifier"}`

Step 44: merqury_stats:

step_state: scheduled

Jobs

Job 1:

Job state is ok

Traceback:

Job Parameters:

Job parameter	Parameter value
__workflow_invocation_uuid__	`"94f0d504136911f0aeed7c1e5239dff8"`
input	`{"values": [{"id": 8, "src": "hdca"}]}`
which	`{"__current_case__": 1, "identifier": "output_merqury.completeness", "which_dataset": "by_identifier"}`

Step 45: join1:

step_state: scheduled

Jobs

Job 1:

Job state is ok

Command Line:

python '/tmp/tmpsnxtmjff/galaxy-dev/tools/filters/join.py' '/tmp/tmpsnxtmjff/files/3/3/6/dataset_336ac91c-c329-4e1c-aef1-5ec9423ae2b6.dat' '/tmp/tmpsnxtmjff/files/4/d/0/dataset_4d008996-f361-4d4e-a4ca-0dd0d51698a5.dat' 1 1 '/tmp/tmpsnxtmjff/job_working_directory/000/41/outputs/dataset_eac409d2-d895-4bee-b484-9f76f14c6e4d.dat' -u -p --index_depth=3 --buffer=50000000 --fill_options_file=/tmp/tmpsnxtmjff/job_working_directory/000/41/configs/tmp32xxg9tp

Exit Code:

```
0
```

Traceback:

Job Parameters:

Job parameter	Parameter value
__input_ext	`"tabular"`
__workflow_invocation_uuid__	`"94f0d504136911f0aeed7c1e5239dff8"`
chromInfo	`"/tmp/tmpsnxtmjff/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"`
dbkey	`"?"`
field1	`"1"`
field2	`"1"`
fill_empty_columns	`{"__current_case__": 1, "do_fill_empty_columns": {"__current_case__": 0, "column_fill_type": "single_fill_value", "fill_value": "."}, "fill_columns_by": "fill_unjoined_only", "fill_empty_columns_switch": "fill_empty"}`
header	`""`
partial	`"-p"`
unmatched	`"-u"`

Step 46: Plotting Nx and Sizes:

step_state: scheduled

Subworkflow Steps

Step 1: Primary data:
- step_state: scheduled
Step 2: Alternate data:
- step_state: scheduled

Step 11: Size Plot:

step_state: scheduled

Jobs

Job 1:

Job state is new

Traceback:

Job Parameters:

Job parameter	Parameter value
__input_ext	`"input"`
__workflow_invocation_uuid__	`"94f0d507136911f0aeed7c1e5239dff8"`
adv	{"axis_text_customization": {"__current_case__": 0, "axis_customization": "default"}, "axis_title_customization": {"__current_case__": 0, "axis_customization": "default"}, "factor": {"__current_case__": 1, "colororder": "1", "colors": "Set1", "factorcol": "1", "factoring": "Single"}, "gridlinecust": "default", "legend": "yes", "plot_title_customization": {"__current_case__": 0, "axis_customization": "default"}, "scaling": {"__current_case__": 0, "plot_scaling": "Automatic"}, "theme": "bw", "transform": "none", "type_conditional": {"__current_case__": 2, "type_options": "lines"}}
chromInfo	`"/tmp/tmpsnxtmjff/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"`
dbkey	`"?"`
out	`{"additional_output_format": "none", "dpi_output_dim": "300.0", "height_output_dim": "4.0", "unit_output_dim": "in", "width_output_dim": "6.0"}`
title	`""`
xlab	`"Scaffold number"`
xplot	`"2"`
ylab	`"Cumulative Size (Mb)"`
yplot	`"3"`

Step 3: Name of primary assembly:
- step_state: scheduled
Step 4: Name of alternate assembly:
- step_state: scheduled

Step 5: toolshed.g2.bx.psu.edu/repos/devteam/add_value/addValue/1.0.1:

step_state: scheduled

Jobs

Job 1:

Job state is ok

Command Line:

perl /tmp/shed_dir/toolshed.g2.bx.psu.edu/repos/devteam/add_value/023f0a3760b3/add_value/fixedValueColumn.pl "/tmp/tmpsnxtmjff/files/d/9/7/dataset_d9788a3e-8bdb-4f8a-8133-e7675a3cfcc1.dat" "/tmp/tmpsnxtmjff/job_working_directory/000/48/outputs/dataset_68cc8d86-2196-45b5-a1a0-63d2f412cb89.dat" "Primary" "no"

Exit Code:

```
0
```

Traceback:

Job Parameters:

Job parameter	Parameter value
__input_ext	`"input"`
__workflow_invocation_uuid__	`"94f0d507136911f0aeed7c1e5239dff8"`
chromInfo	`"/tmp/tmpsnxtmjff/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"`
dbkey	`"?"`
exp	`"Primary"`
iterate	`"no"`

Step 6: toolshed.g2.bx.psu.edu/repos/devteam/add_value/addValue/1.0.1:

step_state: scheduled

Jobs

Job 1:

Job state is ok

Command Line:

perl /tmp/shed_dir/toolshed.g2.bx.psu.edu/repos/devteam/add_value/023f0a3760b3/add_value/fixedValueColumn.pl "/tmp/tmpsnxtmjff/files/7/5/3/dataset_7531e3f5-f618-43b8-82b7-b4a6d72a189e.dat" "/tmp/tmpsnxtmjff/job_working_directory/000/49/outputs/dataset_146b8634-99d5-4014-ba73-a4ce4e899279.dat" "Alternate" "no"

Exit Code:

```
0
```

Traceback:

Job Parameters:

Job parameter	Parameter value
__input_ext	`"input"`
__workflow_invocation_uuid__	`"94f0d507136911f0aeed7c1e5239dff8"`
chromInfo	`"/tmp/tmpsnxtmjff/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"`
dbkey	`"?"`
exp	`"Alternate"`
iterate	`"no"`

Step 7: toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cat/9.5+galaxy0:

step_state: scheduled

Jobs

Job 1:

Job state is new

Traceback:

Job Parameters:

Job parameter	Parameter value
__input_ext	`"input"`
__workflow_invocation_uuid__	`"94f0d507136911f0aeed7c1e5239dff8"`
chromInfo	`"/tmp/tmpsnxtmjff/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"`
dbkey	`"?"`
queries	`[{"__index__": 0, "inputs2": {"values": [{"id": 64, "src": "hda"}]}}]`

Step 8: Cut1:

step_state: scheduled

Jobs

Job 1:

Job state is new

Traceback:

Job Parameters:

Job parameter	Parameter value
__input_ext	`"tabular"`
__workflow_invocation_uuid__	`"94f0d507136911f0aeed7c1e5239dff8"`
chromInfo	`"/tmp/tmpsnxtmjff/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"`
columnList	`"c8,c5,c6"`
dbkey	`"?"`
delimiter	`"T"`

Step 9: Cut1:

step_state: scheduled

Jobs

Job 1:

Job state is new

Traceback:

Job Parameters:

Job parameter	Parameter value
__input_ext	`"tabular"`
__workflow_invocation_uuid__	`"94f0d507136911f0aeed7c1e5239dff8"`
chromInfo	`"/tmp/tmpsnxtmjff/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"`
columnList	`"c8,c4,c7"`
dbkey	`"?"`
delimiter	`"T"`

Step 10: Nx Plot:

step_state: scheduled

Jobs

Job 1:

Job state is new

Traceback:

Job Parameters:

Job parameter	Parameter value
__input_ext	`"input"`
__workflow_invocation_uuid__	`"94f0d507136911f0aeed7c1e5239dff8"`
adv	{"axis_text_customization": {"__current_case__": 0, "axis_customization": "default"}, "axis_title_customization": {"__current_case__": 0, "axis_customization": "default"}, "factor": {"__current_case__": 1, "colororder": "1", "colors": "Set1", "factorcol": "1", "factoring": "Single"}, "gridlinecust": "default", "legend": "yes", "plot_title_customization": {"__current_case__": 0, "axis_customization": "default"}, "scaling": {"__current_case__": 0, "plot_scaling": "Automatic"}, "theme": "bw", "transform": "none", "type_conditional": {"__current_case__": 2, "type_options": "lines"}}
chromInfo	`"/tmp/tmpsnxtmjff/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"`
dbkey	`"?"`
out	`{"additional_output_format": "none", "dpi_output_dim": "300.0", "height_output_dim": "4.0", "unit_output_dim": "in", "width_output_dim": "6.0"}`
title	`""`
xlab	`"x"`
xplot	`"2"`
ylab	`"Nx (Mb)"`
yplot	`"3"`

Step 47: toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cut_tool/9.5+galaxy0:

step_state: scheduled

Jobs

Job 1:

Job state is ok

Command Line:

cut --complement -f '3' '/tmp/tmpsnxtmjff/files/e/a/c/dataset_eac409d2-d895-4bee-b484-9f76f14c6e4d.dat' > '/tmp/tmpsnxtmjff/job_working_directory/000/42/outputs/dataset_fcacf2ac-ae95-4648-8df4-f9a17a15d2de.dat'

Exit Code:

```
0
```

Traceback:

Job Parameters:

Job parameter	Parameter value
__input_ext	`"input"`
__workflow_invocation_uuid__	`"94f0d504136911f0aeed7c1e5239dff8"`
chromInfo	`"/tmp/tmpsnxtmjff/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"`
complement	`"--complement"`
cut_type_options	`{"__current_case__": 0, "colnames_option": {"__current_case__": 1, "header": "N", "list": ["3"]}, "cut_element": "-f", "delimiter": ""}`
dbkey	`"?"`

Step 48: toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_find_and_replace/9.5+galaxy0:

step_state: scheduled

Jobs

Job 1:

Job state is ok

Command Line:

perl '/tmp/shed_dir/toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/6073bb457ec0/text_processing/find_and_replace' -o '/tmp/tmpsnxtmjff/job_working_directory/000/43/outputs/dataset_a0dad38c-9f8c-4f1b-8011-7474d3c4e34a.dat' -g     '#' 'Number of' '/tmp/tmpsnxtmjff/files/f/c/a/dataset_fcacf2ac-ae95-4648-8df4-f9a17a15d2de.dat'

Exit Code:

```
0
```

Traceback:

Job Parameters:

Job parameter	Parameter value
__input_ext	`"input"`
__workflow_invocation_uuid__	`"94f0d504136911f0aeed7c1e5239dff8"`
chromInfo	`"/tmp/tmpsnxtmjff/galaxy-dev/tool-data/shared/ucsc/chrom/?.len"`
dbkey	`"?"`
find_and_replace	`[{"__index__": 0, "caseinsensitive": false, "find_pattern": "#", "global": true, "is_regex": false, "replace_pattern": "Number of", "searchwhere": {"__current_case__": 0, "searchwhere_select": "line"}, "skip_first_line": false, "wholewords": false}]`

Step 6: Genomescope Model Parameters:
- step_state: scheduled
Step 7: Database for Busco Lineage:
- step_state: scheduled
Step 8: Lineage:
- step_state: scheduled
Step 9: SAK input file (Optional):
- step_state: scheduled
Step 10: Name of primary assembly:
- step_state: scheduled

Other invocation details
- error_message
  - Failed to run workflow, at least one job is in [error] state.
- history_id
  - 33ba2dd462011a33
- history_state
  - error
- invocation_id
  - 33ba2dd462011a33
- invocation_state
  - scheduled
- workflow_id
  - cd0e8575d9bc9ece

Updating workflows/VGP-assembly-v2/Assembly-Hifi-only-VGP3 from 0.2.8…

b70fd5c

… to 0.2.9

gxydevbot changed the title ~~Updating workflows/VGP-assembly-v2/Assembly-Hifi-only-VGP3 from 0.2.8 to 0.2.9~~ Updating workflows/VGP-assembly-v2/Assembly-Hifi-only-VGP3 from 0.2.8 to 0.2.9 Apr 7, 2025

gxydevbot force-pushed the workflows/VGP-assembly-v2/Assembly-Hifi-only-VGP3 branch from c4bba57 to b70fd5c Compare April 7, 2025 04:22

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Updating workflows/VGP-assembly-v2/Assembly-Hifi-only-VGP3 from 0.2.8 to 0.2.9 #774

Updating workflows/VGP-assembly-v2/Assembly-Hifi-only-VGP3 from 0.2.8 to 0.2.9 #774

gxydevbot commented Mar 31, 2025

gxydevbot commented Apr 7, 2025

github-actions bot commented Apr 7, 2025

Workflow invocation details

Updating workflows/VGP-assembly-v2/Assembly-Hifi-only-VGP3 from 0.2.8 to 0.2.9 #774

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Updating workflows/VGP-assembly-v2/Assembly-Hifi-only-VGP3 from 0.2.8 to 0.2.9 #774

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gxydevbot commented Mar 31, 2025

gxydevbot commented Apr 7, 2025

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Test Results (powered by Planemo)

Test Summary

Workflow invocation details