Skip to content

[WIP] revamp the docs #498

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
merged 5 commits into from
Jun 25, 2016
Merged

[WIP] revamp the docs #498

merged 5 commits into from
Jun 25, 2016

Conversation

martenson
Copy link
Member

up to advanced dev topics, working on that now

The recommended approach for installing Planemo is to use Homebrew_ or
linuxbrew_. To install planemo this way simply use the ``brew`` command as
follows.
The recommended approach for installing Planemo is to use Conda_
Copy link
Member Author

@martenson martenson Jun 22, 2016

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

I think @jmchilton was against this switch, I will revert back to homebrew.

Copy link
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Probably yes - That conda recipe doesn't get updated nearly as frequently as the Homebrew or PyPI recipe yet. I'm still nervous about using conda environments with Galaxy also - though I guess it should be fine.

I'll try to adjust my workflow with the GCC as impetus and hopefully we can reach a point where that conda recipe is my go to one.

@jmchilton
Copy link
Member

Very nice so far! Thanks a million.

@martenson
Copy link
Member Author

martenson commented Jun 22, 2016

We are back to Homebrew for Planemo itself (but have Conda for seqtk and BWA)

@martenson
Copy link
Member Author

The whole advanced tooldev topics section is now validated and concise.

The only thing I am unclear now is whether we should add another tutorial introducing devs to Conda-controlled requirements?

@martenson
Copy link
Member Author

fixed conflicts

@jmchilton jmchilton merged commit 606cc5c into master Jun 25, 2016
@jmchilton
Copy link
Member

I'm walking through the new docs on the new image and so far it is simply fantastic - this is a great improvement and I profoundly appreciate the effort you put into this! I can't thank you enough @martenson!

@martenson martenson deleted the docs-revamp branch June 27, 2016 03:24
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants