Skip to content

Fix command run by planemo test --skip_venv #907

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
merged 1 commit into from
Jan 3, 2019

Conversation

nsoranzo
Copy link
Member

@nsoranzo nsoranzo commented Jan 3, 2019

Fix the following issue found in https://travis-ci.org/peterjc/galaxy_blast/jobs/474815361 :

$ planemo test --no_conda_auto_install --galaxy_root ${TRAVIS_BUILD_DIR}/galaxy-${GALAXY_BRANCH} --skip_venv tools/
Testing using galaxy_root /home/travis/build/peterjc/galaxy_blast/galaxy-master
Testing tools with command [cd /home/travis/build/peterjc/galaxy_blast/galaxy-master && COMMON_STARTUP_ARGS=--skip-venvexport COMMON_STARTUP_ARGSecho "Set COMMON_STARTUP_ARGS to ${COMMON_STARTUP_ARGS}" && sh run_tests.sh $COMMON_STARTUP_ARGS --report_file /home/travis/build/peterjc/galaxy_blast/tool_test_output.html --xunit_report_file /tmp/tmp0dVdsD/xunit.xml --structured_data_report_file /home/travis/build/peterjc/galaxy_blast/tool_test_output.json functional.test_toolbox]
/bin/sh: 1: COMMON_STARTUP_ARGSecho: not found

Introduced in commit 434099e .

Fix the following issue found in https://travis-ci.org/peterjc/galaxy_blast/jobs/474815361 :
```
$ planemo test --no_conda_auto_install --galaxy_root ${TRAVIS_BUILD_DIR}/galaxy-${GALAXY_BRANCH} --skip_venv tools/
Testing using galaxy_root /home/travis/build/peterjc/galaxy_blast/galaxy-master
Testing tools with command [cd /home/travis/build/peterjc/galaxy_blast/galaxy-master && COMMON_STARTUP_ARGS=--skip-venvexport COMMON_STARTUP_ARGSecho "Set COMMON_STARTUP_ARGS to ${COMMON_STARTUP_ARGS}" && sh run_tests.sh $COMMON_STARTUP_ARGS --report_file /home/travis/build/peterjc/galaxy_blast/tool_test_output.html --xunit_report_file /tmp/tmp0dVdsD/xunit.xml --structured_data_report_file /home/travis/build/peterjc/galaxy_blast/tool_test_output.json functional.test_toolbox]
/bin/sh: 1: COMMON_STARTUP_ARGSecho: not found
```

Introduced in commit 434099e .
Copy link
Member

@bgruening bgruening left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Upps. Thanks @nsoranzo!

@nsoranzo nsoranzo merged commit eba1aa0 into galaxyproject:master Jan 3, 2019
@nsoranzo nsoranzo deleted the fix_planemo_test_skip_venv branch January 3, 2019 14:10
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants