MOLGENIS EMX2 FAIR scientific data platform

The world's most customizable platform for (scientific) data and FAIR principles (findability, accessibility, interoperability and reusability).

Introduction

Use MOLGENIS to precisely model your data as a schema of tables, columns and relationships. Then MOLGENIS auto generates a complete database application with advanced data entry forms, powerful data up/download options and flexible query tools to help you collect, analyse and share your data. If you want to program, you can use PostgreSQL, GraphQL api, batch web services or linked data RDF/TTL interface to query/update the data, and use VueJS to create your own 'apps'.

Guides

• User guide
• Installation guide
• Developer guide

Quick start

• Demo server
• java commandline + postgresql
• docker compose
• using kubernetes

How to contribute

• Build the source code
• Technologies we use

Changelog

Detailed changes for each release are documented in the release notes.

Breaking changes:

Version	Description of issues one might encounter
12.x	Changes to the way pages are stored in settings. Migration for existing pages will be automatic. Frontend support is also available for legacy versions to allow pages to display in the browser, but parsing of JavaScript or style tags are not automatic. Users are recommended to manually move the content into the appropriate editors.
13.x	Upgrade to Java 21. Please update your java version

Licence

MOLGENIS is licensed as LGPLv3. This means it is free to use, and can be integrated both open source and proprietary software as long as MOLGENIS is acknowledged and changes to its source code are given back to the community. Please cite Van der Velde et al (2018) or Swertz et al (2010) if you use MOLGENIS for a scientific publication.