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Add sbdi-gtdb=R10-RS226-1 and update sbdi-gtdb #879

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Merged
merged 4 commits into from
Apr 30, 2025

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erikrikarddaniel
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@erikrikarddaniel erikrikarddaniel commented Apr 30, 2025

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/ampliseq branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core pipelines lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

I just published a new version of SBDI-GTDB which I here include in the pipeline.

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Wow that was fast!
LGTM, just the CHANGELOG entry should go one section up.
The failing test likely just needs a re-run.

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Warning

Newer version of the nf-core template is available.

Your pipeline is using an old version of the nf-core template: 3.2.0.
Please update your pipeline to the latest version.

For more documentation on how to update your pipeline, please see the nf-core documentation and Synchronisation documentation.

@erikrikarddaniel erikrikarddaniel merged commit 59b702f into nf-core:dev Apr 30, 2025
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@erikrikarddaniel erikrikarddaniel deleted the sbdi-gtdb-r226-1 branch April 30, 2025 16:47
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3 participants