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Pull requests: nf-core/viralrecon

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Pull requests list

Replace local snpeff_ann module with nf-core/snpeff/snpeff
#495 opened Apr 7, 2025 by Aberdur • Draft
4 of 9 tasks
1
@Aberdur
5
Fix empty iVar variants MultiQC field
#493 opened Apr 3, 2025 by gorbruno Loading…
4 of 9 tasks
1
Temporary fix for artic/minion (wave local container and conda profiles)
#487 opened Mar 26, 2025 by gorbruno Loading…
9 tasks
4
Short read variants and consensus depth
#482 opened Mar 25, 2025 by gorbruno • Draft
2 of 8 tasks
16
Allow ABACAS for multifasta
#481 opened Mar 25, 2025 by reichan1998 Loading…
9 tasks
17
Resolved issue 381
#480 opened Mar 25, 2025 by alexrhmatthews Loading…
1
@alexrhmatthews
6
Update multiqc implementation
#479 opened Mar 24, 2025 by Joon-Klaps Loading…
5 of 9 tasks
2
fix: use file() function for blast_db parameter in UNTAR_BLAST_DB
#453 opened Dec 17, 2024 by Joon-Klaps Loading…
9 tasks
4
Include lofreq module, and merge lofreq and ivar results
#432 opened Jun 11, 2024 by shesanIsland Loading…
6
Apply samtools fixmate after ivar trim
#396 opened Sep 21, 2023 by wutron Loading…
4 of 9 tasks
1
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