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    176 repositories

    • emevo

      Public
      Simluate Embodied Evolution of Agents
      Jupyter Notebook
      •
      Apache License 2.0
      •0•2•0•0•Updated May 10, 2025May 10, 2025

    • LuscombeU_nfcore_pairgenomealign_fork

      Public
      Pairwise genome comparison pipeline using the LAST software to align a list of query genomes to a target genome, and plot the results
      Nextflow
      •
      MIT License
      •4•0•0•0•Updated May 9, 2025May 9, 2025

    • gene-context

      Public
      Jupyter Notebook
      •0•1•0•1•Updated May 9, 2025May 9, 2025

    • BioinfoUgrp

      Public
      OIST Bioinfo user group
      hpcoistbioinformatics
      Shell
      •2•8•1•0•Updated May 9, 2025May 9, 2025

    • BioinfoUgrp_UnixGoodies_Images

      Public
      Singularity images with cool Unix tools to be exported as modules in HPC clusters
      Dockerfile
      •0•3•3•0•Updated May 8, 2025May 8, 2025

    • plessy_nf_GenomicBreaks

      Public
      Draft Nextflow pipeline to convert alignment files and extract basic stats.
      Nextflow
      •0•0•0•0•Updated May 8, 2025May 8, 2025

    • NEXTNetR

      Public
      C++
      •
      GNU Lesser General Public License v3.0
      •0•0•0•0•Updated May 8, 2025May 8, 2025

    • NEXTNet

      Public
      C++ implementation of the NEXT-Net algorithm for efficient simulation of epidemics on complex networks
      C++
      •
      GNU Lesser General Public License v3.0
      •0•0•0•0•Updated May 8, 2025May 8, 2025

    • nf-core_configs

      Public
      Config files used to define parameters specific to compute environments at different Institutions
      Nextflow
      •
      MIT License
      •308•0•0•1•Updated May 4, 2025May 4, 2025

    • LuscombeU_Oikopleura_genome_assemblies

      Public
      List of github links for Oikopleura genome assemblies
      0•1•0•0•Updated May 2, 2025May 2, 2025

    • smartphone-robot-firmware

      Public
      Firmware for rp2040 used by smartphone-robots
      C
      •0•0•0•0•Updated May 2, 2025May 2, 2025

    • oikGenomePaper

      Public
      Short "custom scripts" used in the Okinawan oikopleura genome paper.
      HTML
      •2•3•0•0•Updated May 1, 2025May 1, 2025

    • NEXTNetPy

      Public
      Python wrapper for the NEXTNet library for efficient simulation of epidemics on complex networks
      Jupyter Notebook
      •
      GNU Lesser General Public License v3.0
      •0•0•0•0•Updated Apr 29, 2025Apr 29, 2025

    • NEXTNet-EmpiricalNetworks

      Public
      Python
      •0•0•0•0•Updated Apr 25, 2025Apr 25, 2025

    • optinist

      Public
      calcium imaging pipeline tool
      neurosciencecalcium-imaging
      TypeScript
      •
      GNU General Public License v3.0
      •13•40•27•8•Updated Apr 22, 2025Apr 22, 2025

    • KonstantinovU_microchannel_100

      Public
      Data for paper "Image-charge detection of electrons on helium in an on-chip trapping device"
      0•0•0•0•Updated Apr 14, 2025Apr 14, 2025

    • Oikopleuradioica_genomeannotation

      Public
      Genome annotation of Oikopleura dioica from different geographical locations
      Shell
      •0•1•1•0•Updated Apr 11, 2025Apr 11, 2025

    • smartphone-robot-cad

      Public
      All 3D CAD and PCB design files for smartphone-robot project.
      Python
      •
      Apache License 2.0
      •0•0•1•0•Updated Apr 4, 2025Apr 4, 2025

    • iSciComp

      Public
      JupyterBook: Introduction to Scientific Computation
      Jupyter Notebook
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Mar 28, 2025Mar 28, 2025

    • LuscombeU_CodingTheTreeofLife

      Public
      Python
      •1•0•0•0•Updated Mar 28, 2025Mar 28, 2025

    • Physics-of-Behavior-Tutorials

      Public
      Jupyter Notebook
      •1•0•0•0•Updated Mar 28, 2025Mar 28, 2025

    • smartphone-robot-android

      Public
      Android development for smartphone-robot
      Java
      •1•0•3•0•Updated Mar 24, 2025Mar 24, 2025

    • VisualStimulation

      Public
      matlab gui for vstim with psychophysics toolbox
      Jupyter Notebook
      •0•4•0•0•Updated Mar 17, 2025Mar 17, 2025

    • LuscombeU_BAR12_assembly

      Public
      0•0•0•0•Updated Mar 11, 2025Mar 11, 2025

    • LuscombeU_OSKA2016_rescaffolding

      Public
      Rescaffolding of the OSKA2016 genome assembly
      Shell
      •0•0•0•0•Updated Mar 11, 2025Mar 11, 2025

    • TER-MT-DB

      Public
      The Termite Mitogenome Database. Centralization of termite mitogenomes and assignation of unique identification code.
      Other
      •1•0•0•0•Updated Mar 1, 2025Mar 1, 2025

    • LuscombeU_fork_of_FASTGA

      Public
      Local fork of https://github.com/thegenemyers/FASTGA – Pairwise whole genome aligner
      C
      •
      Other
      •8•0•0•0•Updated Feb 25, 2025Feb 25, 2025

    • SallanU_impressiontray

      Public
      Dental impression tray for animals (Wibisana et al., 2024)
      MIT License
      •0•1•0•0•Updated Jan 6, 2025Jan 6, 2025

    • LaTeX-template-lab-rotation-proposal

      Public
      LaTeX Template for the OIST Lab Rotation Proposal
      TeX
      •
      MIT License
      •3•0•0•0•Updated Dec 23, 2024Dec 23, 2024

    • LaTeX-template-lab-rotation-report

      Public
      LaTeX Template for the OIST Lab Rotation Report
      TeX
      •
      MIT License
      •3•0•0•0•Updated Dec 23, 2024Dec 23, 2024