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Merged
merged 1 commit into from
Apr 1, 2025
Merged

Feat/deprecate stuff #3354

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2 changes: 2 additions & 0 deletions include/seqan3/argument_parser/argument_parser.hpp
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Expand Up @@ -28,6 +28,8 @@
#include <seqan3/core/debug_stream/detail/to_string.hpp>
#include <seqan3/core/detail/test_accessor.hpp>

SEQAN3_DEPRECATED_HEADER("This header and its functionality is deprecated and will be removed in a future version of SeqAn. Please use the sharg-parser (url: https://github.com/seqan/sharg-parser) instead.");

namespace seqan3
{

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2 changes: 2 additions & 0 deletions include/seqan3/argument_parser/auxiliary.hpp
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Expand Up @@ -19,6 +19,8 @@
#include <seqan3/core/detail/customisation_point.hpp>
#include <seqan3/io/stream/concept.hpp>

SEQAN3_DEPRECATED_HEADER("This header and its functionality is deprecated and will be removed in a future version of SeqAn. Please use the sharg-parser (url: https://github.com/seqan/sharg-parser) instead.");

namespace seqan3::custom
{

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2 changes: 2 additions & 0 deletions include/seqan3/argument_parser/exceptions.hpp
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Expand Up @@ -13,6 +13,8 @@

#include <seqan3/core/platform.hpp>

SEQAN3_DEPRECATED_HEADER("This header and its functionality is deprecated and will be removed in a future version of SeqAn. Please use the sharg-parser (url: https://github.com/seqan/sharg-parser) instead.");

namespace seqan3
{
/*!\brief Argument parser exception that is thrown whenever there is an error
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2 changes: 2 additions & 0 deletions include/seqan3/argument_parser/validators.hpp
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Expand Up @@ -29,6 +29,8 @@
#include <seqan3/utility/type_traits/basic.hpp>
#include <seqan3/utility/views/join_with.hpp>

SEQAN3_DEPRECATED_HEADER("This header and its functionality is deprecated and will be removed in a future version of SeqAn. Please use the sharg-parser (url: https://github.com/seqan/sharg-parser) instead.");

namespace seqan3
{

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2 changes: 2 additions & 0 deletions include/seqan3/search/dream_index/interleaved_bloom_filter.hpp
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Expand Up @@ -16,6 +16,8 @@
#include <seqan3/core/concept/cereal.hpp>
#include <seqan3/core/detail/strong_type.hpp>

SEQAN3_DEPRECATED_HEADER("This header and its functionality is deprecated and will be removed in a future version of SeqAn. Please use the hibf-library (url: https://github.com/seqan/hibf) instead.");

namespace seqan3
{
//!\brief Determines if the Interleaved Bloom Filter is compressed.
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3 changes: 2 additions & 1 deletion test/documentation/seqan3_doxygen_cfg.in
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Expand Up @@ -352,7 +352,8 @@ PREDEFINED = CEREAL_SERIALIZE_FUNCTION_NAME=serialize \
CEREAL_SAVE_MINIMAL_FUNCTION_NAME=save_minimal \
"SEQAN3_DOXYGEN_ONLY(x)= x" \
${SEQAN3_DOXYGEN_PREDEFINED_NDEBUG} \
SEQAN3_WORKAROUND_LITERAL=constexpr
SEQAN3_WORKAROUND_LITERAL=constexpr \
SEQAN3_DEPRECATED_HEADER(x)=
EXPAND_AS_DEFINED = SEQAN3_CPO_OVERLOAD_BODY \
SEQAN3_CPO_OVERLOAD
SKIP_FUNCTION_MACROS = NO
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3 changes: 3 additions & 0 deletions test/seqan3-test.cmake
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Expand Up @@ -106,6 +106,9 @@ if (NOT TARGET seqan3::test)
add_library (seqan3_test INTERFACE)
target_compile_options (seqan3_test INTERFACE "-pedantic" "-Wall" "-Wextra")

#!TODO remove after release 3.4.0
target_compile_definitions (seqan3_test INTERFACE -DSEQAN3_DISABLE_DEPRECATED_WARNINGS)

if (SEQAN3_WITH_WERROR)
target_compile_options (seqan3_test INTERFACE "-Werror")
message (STATUS "Building tests with -Werror.")
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