You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
It would be useful if you can provide a textfile that contains a list of the pdbid_chainid of all the entries in the pdb100 as I can easily use this information to download the mmcif files (which I need in another analysis).
If I want to prepare my pdb100 database of a particular local pdb folder, do I have to do a two-step clustering? Meaning I first cluster using --min-seq-id 1.0 option and then compile all the representative structures from the previous step and run another clustering using -c 0.95 option?
Does using --min-seq-id 1.0 and -c 0.95 options in a single command produce the same output in No.2?
The text was updated successfully, but these errors were encountered:
I just downloaded the
pdb100.tar.gz
from the page that contains the foldseek databases (https://foldseek.steineggerlab.workers.dev/).pdbid_chainid
of all the entries in the pdb100 as I can easily use this information to download the mmcif files (which I need in another analysis).--min-seq-id 1.0
option and then compile all the representative structures from the previous step and run another clustering using-c 0.95
option?--min-seq-id 1.0
and-c 0.95
options in a single command produce the same output in No.2?The text was updated successfully, but these errors were encountered: