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113 Open 284 Closed
113 Open 284 Closed
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Issues list

Database Order - Alters between CPU and GPU resulting in different results.
#458 opened May 6, 2025 by Degnemite
FoldSeek Clustering Parameter Validation
#457 opened May 1, 2025 by ifs21054-itdel
1
Problem with Iterative Search Web Server Output
#456 opened Apr 28, 2025 by meltzj
8
How to Reproduce Clustering Network Figures (e.g., Figure 5 in Nature 2023Paper)?
#453 opened Apr 21, 2025 by LanNa1229
1
Convertmsa and msa2profile for 3di alignemnts?
#452 opened Apr 16, 2025 by EvanKomp
6
database search for comparison: are my data being sent to external server?
#451 opened Apr 15, 2025 by MariaDeligian
2
Is MMseqs2 required before Foldseek clustering?
#447 opened Apr 2, 2025 by YFeriel
2
Trouble with the SSL certificate of foldseek.steineggerlab.workers.dev
#446 opened Mar 26, 2025 by sanjana1093
2
How to apply the results from easy-search to the input of easy-cluster
#445 opened Mar 25, 2025 by QLQL-s
2
Domain prediction by structure search using Foldseek
#444 opened Mar 21, 2025 by xjhzjucas
pdb or mmcif ob AFDB50
#443 opened Mar 21, 2025 by HirokiK0
No GPU devices found when createdb using ProstT5
#442 opened Mar 20, 2025 by wyattxuanyang
2
Foldseek easy-cluster, easy-search
#439 opened Mar 17, 2025 by jmoojun
Segmentation Fault (Core Dumped) when Running foldseek makepaddedseqdb on AFDB50 Database
#436 opened Mar 8, 2025 by zxianren
2
Cannot open lookup file Error: target createdb died
#433 opened Feb 26, 2025 by fatima1492
6
Preparing my pdb100 database
#431 opened Feb 24, 2025 by kyle-davis279
How can I get the pdb or cif format of BFMD database?
#430 opened Feb 21, 2025 by yjyjyjy2016
1
foldseek-10 :: missing libcublasLt_static at link time ?
#429 opened Feb 20, 2025 by EricDeveaud
Discrepancy in Foldseek clustering results compared to AFDB clusters
#428 opened Feb 19, 2025 by YFeriel
2
webserver issues
#426 opened Feb 18, 2025 by martin-steinegger
No result for a reciprocal search of a very long protein
#422 opened Feb 10, 2025 by FlorianTrigodet
3
Possible issue with alntmscore
#416 opened Feb 3, 2025 by skrendaskrenduolis
2
Local easy-multimersearch does not replicate results from webserver
#414 opened Jan 24, 2025 by Dylan-Barcelos
FoldSeek Behavior with PolyGLY Backbone Structures
#412 opened Jan 20, 2025 by SarahKnapp1
7
Clustering performance issue: Foldseek exceeds expected runtime
#403 opened Dec 19, 2024 by YFeriel
2
ProTip! Find all open issues with in progress development work with linked:pr.