Segmentation Fault (Core Dumped) when Running foldseek makepaddedseqdb on AFDB50 Database

[zxianren]

Dear foldseek:
Segmentation Fault (Core Dumped) when Running foldseek makepaddedseqdb on AFDB50 Database

Description:
Command Used:
foldseek makepaddedseqdb afdb afdb_pad
it error Segmentation Fault (Core Dumped):
bogao@bogao-LEGION:~/Documents/software/foldseek$ foldseek makepaddedseqdb afdb afdb_pad
makepaddedseqdb afdb afdb_pad

MMseqs Version: 6cfb880
Substitution matrix aa:3di.out,nucl:3di.out
Mask residues 0
Mask residues probability 0.999995
Write lookup file 1
Threads 16
Verbosity 3
Cluster search 0

lndb afdb_h afdb_pad_tmp_ss_h

Time for processing: 0h 0m 0s 0ms
lndb afdb_ss afdb_pad_tmp_ss

Time for processing: 0h 0m 0s 0ms
afdb_pad_ss exists and will be overwritten
makepaddedseqdb afdb_pad_tmp_ss afdb_pad_ss --sub-mat 'aa:3di.out,nucl:3di.out' --score-bias 0 --mask 0 --mask-prob 0.999995 --mask-lower-case 1 --mask-n-repeat 6 --write-lookup 1 --threads 16 -v 3

[=================================================================] 100.00% 53.67M 37s 774ms
Time for merging to afdb_pad_ss: 0h 0m 34s 762ms
Time for merging to afdb_pad_ss_h: 0h 0m 9s 158ms
Time for processing: 0h 2m 6s 2ms
rmdb afdb_pad_tmp_ss

Time for processing: 0h 0m 0s 0ms
rmdb afdb_pad_tmp_ss_h

Time for processing: 0h 0m 0s 0ms
renamedbkeys afdb_pad_ss.gpu_mapping1 afdb afdb_pad --subdb-mode 1 --threads 16 -v 3

Segmentation fault (core dumped)
/home/bogao/Documents/software/foldseek/afdb_pad.sh: 36: fail: not found

my computer is Nvidia 3060：
cpu Memory: 48 GB RAM
Threads: 16 threads used
Foldseek/MMseqs Version: (e.g., 6cfb880)
so, is the cpu Memory not enough for afdb50 database to padbase?

[milot-mirdita]

Could you run the following command please and post the output here:

head afdb_pad_ss.gpu_mapping1

[zxianren]

hello, mirdita. here is the output:
(base) bogao@bogao-LEGION:~/Documents/software/foldseek$ head afdb_pad_ss.gpu_mapping1
214611162 0
214604374 1
214604332 2
214597994 3
214597903 4
214596904 5
214596588 6
214595300 7
214593302 8
214592123 9

Could you run the following command please and post the output here:

head afdb_pad_ss.gpu_mapping1