Protein Graph Library

Toolbox for molecular animations in Blender, powered by Geometry Nodes.

A comprehensive library for computational molecular biology

A dependency-free cross-platform swiss army knife for PDB files.

An all-atom protein structure dataset for machine learning.

Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm

macromolecular crystallography library and utilities

C-library for calculating Solvent Accessible Surface Areas

PENSA - a collection of python methods for exploratory analysis and comparison of biomolecular conformational ensembles.

Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation

A curated list of awesome computational cryo-EM methods.

Predicting protein structure through sequence modeling

A Python framework for structural systems biology

VSCode Extension for interactively visualising protein structure data in the editor

Python macromolecular parsing (with .pdb/.cif/.mmtf parsing and production)

A Julia package to read, write and manipulate macromolecular structures

RiboNucleic Acid (RNA) Language Model

PyMOL extension to color AlphaFold structures by confidence (pLDDT).

Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM)

The Integrative Modeling Platform