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XIE LAB @ UCI

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  1. NoduleNet NoduleNet Public

    [MICCAI' 19] NoduleNet: Decoupled False Positive Reduction for Pulmonary Nodule Detection and Segmentation

    Python 203 57

  2. DeepLung DeepLung Public

    WACV18 paper "DeepLung: Deep 3D Dual Path Nets for Automated Pulmonary Nodule Detection and Classification"

    Python 158 52

  3. DanQ DanQ Public

    A hybrid convolutional and recurrent neural network for predicting the function of DNA sequences

    Groff 157 72

  4. D-GEX D-GEX Public

    Deep learning for gene expression inference

    Python 145 57

  5. UFold UFold Public

    Python 68 30

  6. UaNet UaNet Public

    Jupyter Notebook 59 18

Repositories

Showing 10 of 39 repositories
  • UFold Public
    uci-cbcl/UFold’s past year of commit activity
    Python 68 MIT 30 28 0 Updated Apr 22, 2025
  • esm-efficient Public

    Efficient implementatin of ESM family.

    uci-cbcl/esm-efficient’s past year of commit activity
    Python 55 MIT 3 1 0 Updated Jan 27, 2025
  • EpiOut Public

    A statistical method to detect, analyze and visualize aberrations in chromatin accessibility (ATAC-seq, DNase-Seq) and quantify its effect on gene expression.

    uci-cbcl/EpiOut’s past year of commit activity
    Python 2 0 1 0 Updated Mar 6, 2024
  • BioML Public
    uci-cbcl/BioML’s past year of commit activity
    4 MIT 1 0 0 Updated Feb 15, 2023
  • scFAN Public
    uci-cbcl/scFAN’s past year of commit activity
    Python 3 MIT 1 0 0 Updated Oct 14, 2022
  • SAILERX Public
    uci-cbcl/SAILERX’s past year of commit activity
    Jupyter Notebook 4 0 1 0 Updated Jul 3, 2022
  • Video-Pre-Training Public Forked from openai/Video-Pre-Training

    Video PreTraining (VPT): Learning to Act by Watching Unlabeled Online Videos

    uci-cbcl/Video-Pre-Training’s past year of commit activity
    Python 0 MIT 150 0 0 Updated Jun 25, 2022
  • RP-Net Public

    Code for Recurrent Mask Refinement for Few-Shot Medical Image Segmentation (ICCV 2021).

    uci-cbcl/RP-Net’s past year of commit activity
    Python 58 9 8 0 Updated Aug 28, 2021
  • SAILER Public
    uci-cbcl/SAILER’s past year of commit activity
    Jupyter Notebook 5 MIT 4 1 0 Updated Jul 27, 2021
  • NoduleNet Public

    [MICCAI' 19] NoduleNet: Decoupled False Positive Reduction for Pulmonary Nodule Detection and Segmentation

    uci-cbcl/NoduleNet’s past year of commit activity
    Python 203 57 23 0 Updated Jun 24, 2020
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