Calibration rejected #447
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Calibration rejected #447
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* Check components in look-ahead mode * fixup
Release 0.10.12
* improve noise notebook * rename quickstart -> model_selection * improve run_notebooks * split nb tests * fixup * fixup * time execution * do not run petab nb -- bad idea * fixup * add walltime plots; minor improvements in others * safe-close smc.run; store calibration end * add visualization test * rename redis_server_starter * give ListEpsilon a length attribute * fix docs * fix tests * fix titles * fixup noise nb * add test function docs
#405) * minor viz updates * improve la eval logging * add global visualization settings * fixup * update and improve nbs * add tests * cosmetics * add figure settings test
Release 0.10.13
* tmp * cache indices in normal transition * add performance study * fix flake8 * cont * cont * cont * various fixes * tmp fix pandas * fixup * update to amici 0.11.12
* init * fix * fix * fix * restructure * fixup * test * fix * fix * fix swig for python 3.9 * add pre-commit hooks * add hook * fix end of files * mini edit * mini update * add issue templates; simplify contribution docs * remove nb again * nbs to tox * prolong time * fix * fix examples * test * test tmp fix * annotate flake8 * test * stuff * fix
* -> py39 * add outputs * disable redis * test * add dummy * test * test * test * test * Test * unfix all
* fix wrong log distributions for petab import; add tests * extend test * add ks test * fix petab priors
* Add yaml2sbml example; map parameter bounds and names * fixup2 * remove yaml2sbml until stable
* fix la sampler weighting * cosmetics * fixup
* fix la sampler weighting * cosmetics * fixup * Save proposal id; Add migration routines * add migration test; add docs * fixup * add env.py * fixup * rm env * fixup n * prettify table name * fix test * fix own review comments * fix failing test
* change default la weight to ess * fix proposal_id for evaluated particles * fix typo
* update releasenotes * Update releasenotes.rst * move doc/releasenotes -> CHANGELOG * Update CHANGELOG.rst
…on (#424) * update releasenotes * Update releasenotes.rst * move doc/releasenotes -> CHANGELOG * test history.particles.proposa_id; pass t=-1 to sampler for calibration
Release 0.10.14
* refactor nr_samples_per_parameter * fixup * fix typos * fix typos * fix weights * fix typo
* limit look-ahead sample number in delayed mode * update releasenotes -> 0.10.15 * improve docs
* limit look-ahead sample number in delayed mode * update releasenotes -> 0.10.15 * test on ubuntu 20.04 * update to r focal, swig 4
…ndencies (#436) * limit look-ahead sample number in delayed mode * update releasenotes -> 0.10.15 * test on ubuntu 20.04 * CI: give petab more time * stuff * stuff * next * add visserver tests; tidy up deps; add flaky
#434) * remove simulation files by default after collecting the summary statistics * comply with the reviewer comments Co-authored-by: Yannik Schälte <[email protected]>
* add description of JupyterHub * unify links in brackets * fix typo
* check feather dep * foggeddaboutdid * adjust alscatispenumnoipa message
Codecov Report
@@ Coverage Diff @@
## early_rejection_morpheus #447 +/- ##
============================================================
+ Coverage 84.25% 86.59% +2.33%
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Files 91 101 +10
Lines 5259 6064 +805
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+ Hits 4431 5251 +820
+ Misses 828 813 -15
Continue to review full report at Codecov.
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