v0.4.0

• FMSI is able to perform dictionary queries, i.e. to return for present k-mers a hash value between 0 and |K|-1 (subcommand hash)
• FMSI has simplified CLI
  • The parameter for path is now positional
  • Removed some paramaters which were not necessary
  • Query streaming is by default disabled and can be turned on
• The output of FMSI is now more detailed giving information not only about the percentage of found k-mers, but printing a presence bitmap for each k-mer

Due to the changes in CLI and output, this introduces breaking changes compared to v0.3.x

v0.3.1

• More clearer command line help messages
• More clearer error messages
• FMSI correctly fails if parameters are provided incorrectly

v0.3.0

• Query time improvements, including support for faster streaming queries
• Improved query robustness, including acceptance of FASTA files, ability to process other than single k-mers and skipping invalid k-mers

Due to the simplifications in interface and especially how query files are handles, this introduces breaking changes compared to 0.2.x

v0.2.4

Improved compilation flags.

v0.2.3

Included dependent repositories as copies to allow deployment on Bioconda.

v0.2.2

• Fixed an off by one error with dollar sign position which caused a few k-mers to be incorrectly treated as not represented.
• Support for interactive use.

v0.2.1

Simplified user interaction with FMSI.

v0.2

Time performance enhancements.

v0.1

Initial experimental SDSL-based implementation of FMSI.